This report keeps coming back on the PDB I am submitting. Only one worked

Issue #25 new
Former user created an issue

INFO//23:43:51.775//Program begin. INFO//23:43:52.099//Loaded PDB structure (BioPython) INFO//23:43:55.564//Loaded PDB structure (OpenBabel) INFO//23:43:55.723//Mapped OB to BioPython atoms and vice-versa. INFO//23:44:04.583//Added hydrogens. INFO//23:44:33.606//Typed atoms. INFO//23:44:33.749//Determined atom explicit and implicit valences, bond orders, atomic numbers, formal charge and number of bound hydrogens. INFO//23:44:34.430//Initialised SIFts. INFO//23:44:34.473//Determined polypeptide residues, chain breaks, termini INFO//23:45:05.220//Percieved and stored rings. INFO//23:45:05.535//Perceived and stored amide groups. INFO//23:45:05.701//Wrote hydrogenated PDB file. Hydrogenation was by Arpeggio using OpenBabel defaults. INFO//23:45:05.958//Added hydrogens to BioPython atoms. INFO//23:45:05.993//Added VdW radii. INFO//23:45:06.028//Added covalent radii. INFO//23:45:06.079//Completed NeighborSearch. INFO//23:45:06.106//Assigned rings to residues. ERROR//23:45:06.108//Invalid selector: / Traceback (most recent call last): File "/var/www/arpeggioweb/arpeggio/arpeggio.py", line 1377, in <module> selection = selection_parser(args.selection, entity) File "/var/www/arpeggioweb/arpeggio/arpeggio.py", line 168, in selection_parser raise SelectionError(original_selection) main.SelectionError

Comments (0)

  1. Log in to comment