GALAXY ====== http://galaxyproject.org/ The latest information about Galaxy is always available via the Galaxy website above. HOW TO START ============ Galaxy requires Python 2.6 or 2.7. To check your python version, run: % python -V Python 2.7.3 Start Galaxy: % sh run.sh Once Galaxy completes startup, you should be able to view Galaxy in your browser at: http://localhost:8080 You may wish to make changes from the default configuration. This can be done in the universe_wsgi.ini file. Tools are configured in tool_conf.xml. Details on adding tools can be found on the Galaxy website (linked above). Not all dependencies are included for the tools provided in the sample tool_conf.xml. A full list of external dependencies is available at: http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies
7a94d5e - Merge with upstream.
a9a0ac9 - Fix for determining a guid in the install_manager.
26da838 - Use get_history() in tools API controller.
e059c66 - Expose the show method anonymously.
7dec267 - Fix API visibility for the repository_revisions index.
8a1ddde - Syntax error and bug fixes.
0c01036 - Merge from galaxy-dist
a477486 - Bugfix for tool-to-destination mapping, tool ids are lowercased but the mapping id was not lowercased.
4b1c7ad - Remove unmaintained RGENETICS tools from Galaxy Main
1f34ec1 - Pack script.
185e249 - Trackster: fix data-mode compatibility test; this fixes mode changing from coverage to dense/squish/pack.
f23d8ae - Improve selection process for bcbio-nextgen pipelines: fix organism selection and work towards removing barcode support
1c098ff - Update links to latest version of pathprint tools
02de05c - Merge with upstream
38962da - Add back in symlink to style sheets
5620d17 - Update from upstream galaxy-dist; part 2
122573b - Update from upstream galaxy-dist
2c8b41b - Update from upstream galaxy-dist
e0e42ba - Remove old version of PathPrint.
171e18d - New version of PathPrint
2f75e2f - New version of PathPrint
22ef970 - Use slideUp rather than hide for pretty hiding of HDAs when removed.
2462f31 - Add simple read group options for Bowtie2.
8e1eec8 - Automated merge.
e603073 - Functional tests to verify batch reset of repository metadata on tool shed and galaxy side. Made functional test scripts possible to run independently. Cleaned up ...
29957b4 - Bowtie2 wrapper: move read group parameters out of full parameter settings and into own group.
36bb88e - Migrate bowtie to tool shed
63ed3c7 - Pull from galaxy-dist: Dec 20, 2012 distribution