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Author Commit Message Labels Comments Date
YOUNG-SUK LEE
configure.ac weird behavior
Branches
liblinear
YOUNG-SUK LEE
update makefile; SVMperfer as baseline
Branches
liblinear
YOUNG-SUK LEE
first commit: cmdline
Branches
liblinear
Qian Zhu
converting float addition to integer addition in LinearCombine
Branches
search_project
Qian Zhu
fixed important bug in seekevaluate.cpp added flexibility in database.cpp to allow reading directory with only subset of *.db files (rather than having the entire directory present) parallelized main dataset weighting step
Branches
search_project
Qian Zhu
main search program, SeekMiner
Branches
search_project
Qian Zhu
working SEEK copy with cross-validated weighting
Branches
search_project
Qian Zhu
halfway finished seekweight.h
Branches
search_project
Qian Zhu
added classes for weighting datasets, evaluating precision, and creating cross-validation partitions
Branches
search_project
Qian Zhu
removed unused file seekmatrix.h
Branches
search_project
Qian Zhu
added tools for calculating/reading/saving z-score avg and gene-presence vector added testing tool SeekReader (for reading db files) combined changes from 895b9754a89f
Branches
search_project
Qian Zhu
added map and contiguous matrix data structures
Branches
search_project
Qian Zhu
more merge
Branches
search_project
Qian Zhu
merge changes from parallel_data2db
Branches
search_project
Qian Zhu
Created new branch for search
Branches
search_project
Qian Zhu
merge with main
Branches
parallel_data2db
Qian Zhu
merged (most of) parallel_db branch into main merged Chris' change with mine (except tools/Makefile.am and configure.ac that break gen_auto) things in parallel_db not brought to main include: 1) CDatabaselet::OpenFast() in database.cpp 2) class CUcharFullMatrix in compactmatrixi.h
Qian Zhu
branch merge
Branches
parallel_data2db
Qian Zhu
Removed -d flag in DBCombiner. Now require db list explicitly include file path. Added more comments in database.cpp
Branches
parallel_data2db
Qian Zhu
Added configure notes for cygwin platform Removed execinfo.h in svmperf.h to support cygwin compile
Branches
parallel_data2db
Qian Zhu
Added tool DBCombiner for combining multiple CDatabaselets (made from the same CDatabase) Added support nibble in DBCombiner
Branches
parallel_data2db
Chris Park
Added new tool to convert directed Dat files into PCL, used for directed gene-gene networks
Qian Zhu
cleaned up methods from my previous commits added more comments
Branches
parallel_data2db
Qian Zhu
added comments in combine() method added function in Dat to allow reading row in DAB by seeking in file (ie without reading entire file)
Branches
parallel_data2db
Qian Zhu
Added Combine function to allow combining multiple CDatabaselets Added more comments
Branches
parallel_data2db
Qian Zhu
clean up, fixed indentation
Branches
parallel_data2db
Qian Zhu
removed #DATABASE_NIBBLES macro
Branches
parallel_data2db
Qian Zhu
removed DEFINE_NIBBLE flag everywhere, require CDatabase and CDatabaselet constructors to use isNibble bool as parameter adjusted command line options of BNServer, Contexter, and Data2DB to allow specification of nibble/byte type
Branches
parallel_data2db
Qian Zhu
removed comments
Branches
parallel_data2db
Qian Zhu
solved 1021 number of db files limit optimized full matrix CUcharFullMatrix, designed to store byte-level data
Branches
parallel_data2db
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