Commits

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Author Commit Message Labels Comments Date
Qian Zhu
merge with main
Branches
parallel_data2db
Qian Zhu
merged (most of) parallel_db branch into main
Qian Zhu
branch merge
Branches
parallel_data2db
Qian Zhu
Removed -d flag in DBCombiner. Now require db list explicitly include file path.
Branches
parallel_data2db
Qian Zhu
Added configure notes for cygwin platform
Branches
parallel_data2db
Qian Zhu
Added tool DBCombiner for combining multiple CDatabaselets (made from the same CDatabase)
Branches
parallel_data2db
Chris Park
Added new tool to convert directed Dat files into PCL, used for directed gene-gene networks
Qian Zhu
cleaned up methods from my previous commits
Branches
parallel_data2db
Qian Zhu
added comments in combine() method
Branches
parallel_data2db
Qian Zhu
Added Combine function to allow combining multiple CDatabaselets
Branches
parallel_data2db
Qian Zhu
clean up, fixed indentation
Branches
parallel_data2db
Qian Zhu
removed #DATABASE_NIBBLES macro
Branches
parallel_data2db
Qian Zhu
removed DEFINE_NIBBLE flag everywhere, require CDatabase and CDatabaselet constructors to use isNibble bool as parameter
Branches
parallel_data2db
Qian Zhu
removed comments
Branches
parallel_data2db
Qian Zhu
solved 1021 number of db files limit
Branches
parallel_data2db
Qian Zhu
added GetFullRow() for halfmatrix
Branches
parallel_data2db
Qian Zhu
new branch: parallel data2db
Branches
parallel_data2db
Qian Zhu
merge with main
Qian Zhu
Fixed bug in line 315 of database.cpp (filelist should not have c_DAB extention)
Branches
data2db
Qian Zhu
Qian's branch for Data2DB
Branches
data2db
Qian Zhu
fixed database.cpp to close file pointer m_fstm in CDatabase destructor
Qian Zhu
Data2DB: added new Open() method to allow user specify list of DAB files through command arg
Aaron Wong
Merge with main branch
Aaron Wong
Merge with main
Branches
counter_missing_zeros
Aaron Wong
Apply laplace smoothing consistently (whether regularization is used). This fixes a bug where datasets with alphas equal to zero (no regularizing) where not laplace smoothed.
Branches
counter_missing_zeros
Casey Greene
allow Data2DB to work with qdabs
Casey Greene
all changes merged into main
Branches
counter_missing_zeros
Casey Greene
merge counter context options
Casey Greene
merge aaron's changes
Casey Greene
Apply patch from @tjablin to build successfully without log4cpp. This closes issue #12.
Branches
counter_context_options
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