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Author Commit Message Labels Comments Date
Qian Zhu avatarQian Zhu
Include Casey's changes
Qian Zhu avatarQian Zhu
Added SeekPValue for calculating signficance of retrieved genes
Casey Greene avatarCasey Greene
update combiner documentation, this closes issue #21
Casey Greene avatarCasey Greene
adjust lines as descibed in issue #24, this closes issue #24
Casey Greene avatarCasey Greene
more code cleanup, try to read quants *before* dabs (saves significant time with MIer, particularly with valgrind running), improved table output
Casey Greene avatarCasey Greene
remove old debug code
Casey Greene avatarCasey Greene
This clarifies the MIer documentation and closes issue #5
Casey Greene avatarCasey Greene
subsample code comparison was reversed, this closes issue #23
Casey Greene avatarCasey Greene
parallel MIer with openmp, major code cleanup, only do stuff related to MI if we actually need it (i.e. not for other measures)
Casey Greene avatarCasey Greene
automatic whitespace correction via vim
Casey Greene avatarCasey Greene
Allow MIer to load the datasets once if enough RAM is available (command line option)
Casey Greene avatarCasey Greene
astyle --style=stroustrup, address style/indentation inconsistencies
Casey Greene avatarCasey Greene
one last gcc 4.7 fix
Casey Greene avatarCasey Greene
update everything that builds before SVMperfing for gcc 4.7 unistd.h change (see: http://gcc.gnu.org/gcc-4.7/changes.html )
Casey Greene avatarCasey Greene
Add missing binaries to configure.ac.
Casey Greene avatarCasey Greene
add gsl to ubuntu instructions to match qian's changes
Qian Zhu avatarQian Zhu
Merge
Qian Zhu avatarQian Zhu
Added functionality to calculate average query-query correlation
Chris Park avatarChris Park
Added function to do a user defined weighted combination of dabs
Chris Park avatarChris Park
SVMperfing added option to sample gold standard
Aaron Wong avatarAaron Wong
Fix obo, remove debug
Aaron Wong avatarAaron Wong
Merge
Aaron Wong avatarAaron Wong
Remove debug; alternative float array for storing edge scores
Qian Zhu avatarQian Zhu
Refine search datasets if some search datasets are found to contain no query genes.
Qian Zhu avatarQian Zhu
merge
Qian Zhu avatarQian Zhu
seekcentral: added pseudo (or simulated) weight option for equal weighting, order-statistics
Qian Zhu avatarQian Zhu
Fixed bug in GSL library detection (see src/Makefile.am)
Aaron Wong avatarAaron Wong
remove debug
Aaron Wong avatarAaron Wong
merge
Aaron Wong avatarAaron Wong
Add on-the-fly inference to BNServer; fix bug when initializing nibble flag
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