disgenet2r is an R package to query and expand DisGeNET data (www.disgenet.org), and to visualize the results within R framework.
The disgenet2r data belongs to DisGeNET v5.0 (May, 2017).
Note to users: The package has not been updated to query DisGeNET v6.0 (January, 2019)
What is this repository for?
This report is used for package distribution and testing until it is ready to be published in BioConductor.
- Version: 0.99.0
- Authors: Alba Gutierrez-Sacristan (GRIB-UPF), Janet Piñero (GRIB-IMIM), Núria Queralt-Rosinach (GRIB-IMIM), Emilio Centeno (GRIB-IMIM), and Laura Furlong (GRIB-IMIM-UPF)
- Maintainer: firstname.lastname@example.org
How to start
disgenet2r can be installed using
devtools from this repository:
The following lines show two examples of how DisGeNET can be queried using
- Gene Query
library(disgenet2r) gq <- disgenetGene(gene = 3953, database = "ALL", score = c(">", 0.1) )
- Disease Query
library(disgenet2r) dq <- disgenetDisease(disease = "umls:C0028754", database = "ALL", score = c('>', 0.3) )