A Cytoscape (3.2+) app for visualisation and analysis of spatially-resolved gene expression data.

Quick summary

  • Import spatial gene expression data as csv files (name,x,y)
  • Find transcripts that are spatially co-expressed within different regions
  • Synchronise multiple networks and see the differences
  • Apply various filtering options
  • Find other information on the InsituNet Wiki

Compiling from source

InsituNet uses maven for building. It should be possible to build the jar with mvn install.