A Cytoscape (3.2+) app for visualisation and analysis of spatially-resolved gene expression data.
- Import spatial gene expression data as csv files (name,x,y)
- Find transcripts that are spatially co-expressed within different regions
- Synchronise multiple networks and see the differences
- Apply various filtering options
- Find other information on the InsituNet Wiki
Compiling from source
InsituNet uses maven for building. It should be possible to build the jar with