multovl
1.3
Multiple overlaps of genomic regions
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This is the complete list of members for multovl::ClassicOpts, including all inherited members.
add_bool_switch(const std::string &name, bool *varp, const std::string &descr, const char nm= '\0') | multovl::Polite | protected |
add_error(const std::string &msg) | multovl::Polite | protected |
add_mandatory_option(const std::string &name, const std::string &descr, const char nm= '\0') | multovl::Polite | inlineprotected |
add_option(const std::string &name, Opttype *optvarp, const Opttype &defval, const std::string &descr, const char nm= '\0') | multovl::Polite | inlineprotected |
check_variables() | multovl::ClassicOpts | protectedvirtual |
ClassicOpts() (defined in multovl::ClassicOpts) | multovl::ClassicOpts | |
error_messages() const | multovl::Polite | inline |
error_reset() | multovl::Polite | protected |
error_status() const | multovl::Polite | inline |
fetch_value(const std::string &optnm) const | multovl::Polite | inlineprotected |
help_needed() const | multovl::Polite | inline |
input_files() const | multovl::ClassicOpts | inline |
load_from() const | multovl::ClassicOpts | inline |
maxmult() const (defined in multovl::MultovlOptbase) | multovl::MultovlOptbase | inline |
minmult() const (defined in multovl::MultovlOptbase) | multovl::MultovlOptbase | inline |
MultovlOptbase() (defined in multovl::MultovlOptbase) | multovl::MultovlOptbase | |
nointrack() const (defined in multovl::MultovlOptbase) | multovl::MultovlOptbase | inline |
option_seen(const std::string &optnm) const | multovl::Polite | inlineprotected |
outformat() const | multovl::ClassicOpts | inline |
ovlen() const (defined in multovl::MultovlOptbase) | multovl::MultovlOptbase | inline |
param_str() const (defined in multovl::ClassicOpts) | multovl::ClassicOpts | virtual |
parse_check(int argc, char *argv[]) | multovl::Polite | |
perform_parsing(int argc, char *argv[]) | multovl::Polite | protected |
Polite(const std::string &descr="Options") | multovl::Polite | explicitprotected |
pos_opts() const | multovl::Polite | |
print_help(std::ostream &out) const | multovl::ClassicOpts | virtual |
print_version(std::ostream &out) const | multovl::MultovlOptbase | virtual |
process_commandline(int argc, char *argv[]) | multovl::Polite | |
save_to() const | multovl::ClassicOpts | inline |
solitary() const (defined in multovl::MultovlOptbase) | multovl::MultovlOptbase | inline |
source() const | multovl::ClassicOpts | inline |
timing() const (defined in multovl::MultovlOptbase) | multovl::MultovlOptbase | inline |
uniregion() const (defined in multovl::MultovlOptbase) | multovl::MultovlOptbase | inline |
version_info(std::ostream &out) const | multovl::MultovlOptbase | protectedvirtual |
version_needed() const | multovl::Polite | inline |
~Polite() (defined in multovl::Polite) | multovl::Polite | inlinevirtual |