multovl
1.3
Multiple overlaps of genomic regions
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multovl
io
Linereader
multovl::io::Linereader Member List
This is the complete list of members for
multovl::io::Linereader
, including all inherited members.
_chrom
(defined in
multovl::io::Linereader
)
multovl::io::Linereader
protected
_comment
multovl::io::Linereader
protected
_err
multovl::io::Linereader
protected
_fieldcnt
multovl::io::Linereader
protected
_first
(defined in
multovl::io::Linereader
)
multovl::io::Linereader
protected
_last
(defined in
multovl::io::Linereader
)
multovl::io::Linereader
protected
_name
(defined in
multovl::io::Linereader
)
multovl::io::Linereader
protected
_status
multovl::io::Linereader
protected
_strand
(defined in
multovl::io::Linereader
)
multovl::io::Linereader
protected
chrom
() const (defined in
multovl::io::Linereader
)
multovl::io::Linereader
inline
CLEAN
enum value
multovl::io::Linereader
comment
() const
multovl::io::Linereader
inline
COMMENT
enum value
multovl::io::Linereader
DATA
enum value
multovl::io::Linereader
EMPTY
enum value
multovl::io::Linereader
empty_white
(const std::string &str)
multovl::io::Linereader
protected
static
ERROR
enum value
multovl::io::Linereader
error_msg
() const
multovl::io::Linereader
inline
fieldcnt
() const
multovl::io::Linereader
inline
first
() const (defined in
multovl::io::Linereader
)
multovl::io::Linereader
inline
last
() const (defined in
multovl::io::Linereader
)
multovl::io::Linereader
inline
Linereader
(const std::string &commentchars="#")
multovl::io::Linereader
explicit
name
() const (defined in
multovl::io::Linereader
)
multovl::io::Linereader
inline
parse
(const std::string &line)
multovl::io::Linereader
parse_data
(const std::string &line)=0
multovl::io::Linereader
protected
pure virtual
read_into
(Region ®ion) const =0
multovl::io::Linereader
pure virtual
reset
()
multovl::io::Linereader
protected
virtual
set_statusflag
(Status flag)
multovl::io::Linereader
inline
protected
status
() const
multovl::io::Linereader
inline
Status
enum name
multovl::io::Linereader
str_to_uint
(std::string &str)
multovl::io::Linereader
protected
static
strand
() const (defined in
multovl::io::Linereader
)
multovl::io::Linereader
inline
~Linereader
() (defined in
multovl::io::Linereader
)
multovl::io::Linereader
inline
virtual
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