multovl
1.3
Multiple overlaps of genomic regions
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![]() ![]() | Ancestor regions representing the regions giving rise to overlaps |
![]() ![]() | Classes to read BAM-formatted binary files and maybe later to write them, too |
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![]() ![]() | Module to handle file format recognition |
![]() ![]() | Classes to read input files and to write output |
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![]() ![]() | Text-based input. Classes for reading lines from ASCII genomic data files (BED, GFF). Parsing is simplified, only the coordinates and region names are processed |
![]() ![]() | Text-based output. Classes for writing MultiRegions to text line strings |
![]() ![]() | Multiple genomic region overlaps |
![]() ![]() | Region representing multiple overlaps for file-based "multovl" |
![]() ![]() | Collection of multiple region limits |
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![]() ![]() | Wrapper around the overengineered boost::program_options |
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![]() ![]() | Genomic regions with coordinates and a name |
![]() ![]() | Helper class to keep track of the limits (first, last position) of regions to be overlapped |
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![]() ![]() | Classes to read ASCII text input streams (or files) and (later) to write text output |
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![]() ![]() | Base classes to read/write input/output tracks (collections of regions) |