multovl
1.3
Multiple overlaps of genomic regions
|
Directories | |
directory | prob |
Files | |
file | bamio.hh [code] |
Classes to read BAM-formatted binary files and maybe later to write them, too. | |
file | classicopts.hh [code] |
file | classicpipeline.hh [code] |
file | fileformat.hh [code] |
Module to handle file format recognition. | |
file | fileio.hh [code] |
Classes to read input files and to write output. | |
file | linereader.hh [code] |
Text-based input. Classes for reading lines from ASCII genomic data files (BED, GFF). Parsing is simplified, only the coordinates and region names are processed. | |
file | linewriter.hh [code] |
Text-based output. Classes for writing MultiRegions to text line strings. | |
file | textio.hh [code] |
Classes to read ASCII text input streams (or files) and (later) to write text output. | |
file | trackio.hh [code] |
Base classes to read/write input/output tracks (collections of regions). | |