35 #ifndef MULTOVL_PIPELINE_HEADER
36 #define MULTOVL_PIPELINE_HEADER
42 #include "basepipeline.hh"
84 #endif // MULTOVL_PIPELINE_HEADER
std::map< std::string, MultiOverlap > chrom_multovl_map
There is one MultiOverlap object for each chromosome.
Definition: pipeline.hh:63
Abstract class that provides a framework for detecting multiple overlaps using the MultiOverlap class...
Definition: pipeline.hh:57
virtual unsigned int detect_overlaps()
Multiple genomic region overlaps.
const chrom_multovl_map & cmovl() const
Definition: pipeline.hh:72
Definition: basepipeline.hh:69
chrom_multovl_map & cmovl()
Definition: pipeline.hh:75