multovl  1.3
Multiple overlaps of genomic regions
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file Directory Reference

Directories

directory  prob
 

Files

file  bamio.hh [code]
 Classes to read BAM-formatted binary files and maybe later to write them, too.
 
file  classicopts.hh [code]
 
file  classicpipeline.hh [code]
 
file  fileformat.hh [code]
 Module to handle file format recognition.
 
file  fileio.hh [code]
 Classes to read input files and to write output.
 
file  linereader.hh [code]
 Text-based input. Classes for reading lines from ASCII genomic data files (BED, GFF). Parsing is simplified, only the coordinates and region names are processed.
 
file  linewriter.hh [code]
 Text-based output. Classes for writing MultiRegions to text line strings.
 
file  textio.hh [code]
 Classes to read ASCII text input streams (or files) and (later) to write text output.
 
file  trackio.hh [code]
 Base classes to read/write input/output tracks (collections of regions).