multovl  1.3
Multiple overlaps of genomic regions
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freeregions.hh
1 /* <LICENSE>
2 License for the MULTOVL multiple genomic overlap tools
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35 #ifndef MULTOVL_PROB_FREEREGIONS_HEADER
36 #define MULTOVL_PROB_FREEREGIONS_HEADER
37 
38 // == Header freeregions.hh ==
39 
45 
46 // -- Own headers --
47 
48 #include "region.hh"
49 #include "randomgen.hh"
50 
51 // -- System headers --
52 
53 #include <vector>
54 
55 namespace multovl {
56 namespace prob {
57 
58 // == Classes ==
59 
68 {
69  public:
70 
75  explicit FreeRegions(const std::vector<Region>& frees);
76 
80  bool fit(const Region& reg) const;
81 
88  const Region& select_free_region(UniformGen& rng, unsigned int minlen) const;
89 
90  private:
91 
92  // data
93  std::vector<Region> _frees;
94  std::vector<float> _roulette_sectors;
95 };
96 
97 } // namespace prob
98 } // namespace multovl
99 
100 #endif // MULTOVL_PROB_FREEREGIONS_HEADER
const Region & select_free_region(UniformGen &rng, unsigned int minlen) const
Convenience class that wraps a uniform RND generator.
Definition: randomgen.hh:51
Instances of the Region class represent regions on a sequence. They have first and last coordinates...
Definition: region.hh:65
FreeRegions(const std::vector< Region > &frees)
Genomic regions with coordinates and a name.
Definition: freeregions.hh:67
bool fit(const Region &reg) const