multovl
1.3
Multiple overlaps of genomic regions
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#include "probpipeline.hh"
Public Types | |
typedef std::map< unsigned int, unsigned int > | mtolen_t |
multiplicity => total overlap length map | |
Public Member Functions | |
OvlenCounter () | |
Init to empty. | |
void | update (const MultiOverlap::multiregvec_t &overlaps) |
const mtolen_t & | mtolen () const |
Internal class to keep track of overlap lengths. Basically a multiplicity => total overlap length map
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inline |
void multovl::prob::ProbPipeline::OvlenCounter::update | ( | const MultiOverlap::multiregvec_t & | overlaps | ) |
Sums the overlap lengths for each multiplicity
overlaps | a vector of MultiRegion objects which are the results of a multiple overlap calculation |