multovl  1.3
Multiple overlaps of genomic regions
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multovl::ClassicOpts Member List

This is the complete list of members for multovl::ClassicOpts, including all inherited members.

add_bool_switch(const std::string &name, bool *varp, const std::string &descr, const char nm= '\0')multovl::Politeprotected
add_error(const std::string &msg)multovl::Politeprotected
add_mandatory_option(const std::string &name, const std::string &descr, const char nm= '\0')multovl::Politeinlineprotected
add_option(const std::string &name, Opttype *optvarp, const Opttype &defval, const std::string &descr, const char nm= '\0')multovl::Politeinlineprotected
check_variables()multovl::ClassicOptsprotectedvirtual
ClassicOpts() (defined in multovl::ClassicOpts)multovl::ClassicOpts
error_messages() const multovl::Politeinline
error_reset()multovl::Politeprotected
error_status() const multovl::Politeinline
fetch_value(const std::string &optnm) const multovl::Politeinlineprotected
help_needed() const multovl::Politeinline
input_files() const multovl::ClassicOptsinline
load_from() const multovl::ClassicOptsinline
maxmult() const (defined in multovl::MultovlOptbase)multovl::MultovlOptbaseinline
minmult() const (defined in multovl::MultovlOptbase)multovl::MultovlOptbaseinline
MultovlOptbase() (defined in multovl::MultovlOptbase)multovl::MultovlOptbase
nointrack() const (defined in multovl::MultovlOptbase)multovl::MultovlOptbaseinline
option_seen(const std::string &optnm) const multovl::Politeinlineprotected
outformat() const multovl::ClassicOptsinline
ovlen() const (defined in multovl::MultovlOptbase)multovl::MultovlOptbaseinline
param_str() const (defined in multovl::ClassicOpts)multovl::ClassicOptsvirtual
parse_check(int argc, char *argv[])multovl::Polite
perform_parsing(int argc, char *argv[])multovl::Politeprotected
Polite(const std::string &descr="Options")multovl::Politeexplicitprotected
pos_opts() const multovl::Polite
print_help(std::ostream &out) const multovl::ClassicOptsvirtual
print_version(std::ostream &out) const multovl::MultovlOptbasevirtual
process_commandline(int argc, char *argv[])multovl::Polite
save_to() const multovl::ClassicOptsinline
solitary() const (defined in multovl::MultovlOptbase)multovl::MultovlOptbaseinline
source() const multovl::ClassicOptsinline
timing() const (defined in multovl::MultovlOptbase)multovl::MultovlOptbaseinline
uniregion() const (defined in multovl::MultovlOptbase)multovl::MultovlOptbaseinline
version_info(std::ostream &out) const multovl::MultovlOptbaseprotectedvirtual
version_needed() const multovl::Politeinline
~Polite() (defined in multovl::Polite)multovl::Politeinlinevirtual