35 #ifndef MULTOVL_BAMIO_HEADER
36 #define MULTOVL_BAMIO_HEADER
59 #include "api/BamReader.h"
60 #include "api/BamAux.h"
76 explicit BamReader(
const std::string& infname);
92 BamTools::BamReader _bamreader;
93 BamTools::RefVector _refs;
94 BamTools::BamAlignment _albuf;
105 #endif // MULTOVL_BAMIO_HEADER
virtual std::string read_into(std::string &chrom, Region ®)
Definition: trackio.hh:69
Instances of the Region class represent regions on a sequence. They have first and last coordinates...
Definition: region.hh:65
BamReader(const std::string &infname)
Base classes to read/write input/output tracks (collections of regions).