multovl
1.3
Multiple overlaps of genomic regions
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multovl
prob
ShuffleOvl
multovl::prob::ShuffleOvl Member List
This is the complete list of members for
multovl::prob::ShuffleOvl
, including all inherited members.
add
(const Region ®ion, unsigned int trackid)
multovl::MultiRegLimit
add_randomplacer
(unsigned int reglen, unsigned int trackid)
multovl::prob::ShuffleOvl
find_overlaps
(unsigned int ovlen, unsigned int minmult=1, unsigned int maxmult=0, bool intrack=true)
multovl::MultiOverlap
find_unionoverlaps
(unsigned int ovlen, unsigned int minmult=2, unsigned int maxmult=0)
multovl::MultiOverlap
fit_into_frees
(const Region ®) const
multovl::prob::ShuffleOvl
inline
MultiOverlap
()
multovl::MultiOverlap
inline
MultiOverlap
(const Region ®ion, unsigned int trackid)
multovl::MultiOverlap
inline
MultiRegLimit
()
multovl::MultiRegLimit
inline
MultiRegLimit
(const Region ®ion, unsigned int trackid)
multovl::MultiRegLimit
inline
MultiRegLimit
(const MultiRegLimit &other)
multovl::MultiRegLimit
multiregvec_t
typedef (defined in
multovl::MultiOverlap
)
multovl::MultiOverlap
nonconst_reglim
()
multovl::MultiRegLimit
inline
protected
operator+=
(const MultiRegLimit &rhs)
multovl::MultiRegLimit
operator=
(const MultiRegLimit &rhs)
multovl::MultiRegLimit
overlap_stats
(Counter &counter) const
multovl::MultiOverlap
overlaps
() const
multovl::MultiOverlap
inline
reglim
() const
multovl::MultiRegLimit
inline
reglim_t
typedef (defined in
multovl::MultiRegLimit
)
multovl::MultiRegLimit
shuffle
(UniformGen &rng)
multovl::prob::ShuffleOvl
ShuffleOvl
(const std::vector< Region > &frees)
multovl::prob::ShuffleOvl
explicit
~MultiRegLimit
() (defined in
multovl::MultiRegLimit
)
multovl::MultiRegLimit
inline
virtual
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