multovl  1.3
Multiple overlaps of genomic regions
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fileformat.hh
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1 /* <LICENSE>
2 License for the MULTOVL multiple genomic overlap tools
3 
4 Copyright (c) 2007-2012, Dr Andras Aszodi,
5 Campus Science Support Facilities GmbH (CSF),
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35 #ifndef MULTOVL_FILEFORMAT_HEADER
36 #define MULTOVL_FILEFORMAT_HEADER
37 
38 // == HEADER fileformat.hh ==
39 
46 // -- Standard headers --
47 
48 #include <string>
49 
50 namespace multovl {
51 namespace io {
52 
57 {
58 public:
59 
60  enum Kind {
61  UNKNOWN = 0,
62  BED = 1, // these are ASCII...
63  GFF2 = 2,
64  GFF3 = 4, // also GTF
65  GFF = 6, // GFF2 | GFF3
66  BAM = 8 // this is binary
67  };
68 
73  static
74  Kind from_filename(const std::string& filenm);
75 
79  static
80  std::string to_string(Kind format);
81 
83  static
84  std::string known_extensions();
85 
86 private:
87 
88  static
89  Kind from_string(const std::string& fstr);
90 }; // class Fileformat
91 
92 } // namespace io
93 } // namespace multovl
94 
95 #endif // MULTOVL_FILEFORMAT_HEADER
Definition: fileformat.hh:56
static std::string known_extensions()
static std::string to_string(Kind format)
static Kind from_filename(const std::string &filenm)