multovl  1.3
Multiple overlaps of genomic regions
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multovl::prob::ProbPipeline Member List

This is the complete list of members for multovl::prob::ProbPipeline, including all inherited members.

add_all_errors(const Errors &other)multovl::BasePipelineinlineprotected
add_error(const std::string &prefix, const std::string &what)multovl::BasePipelineinlineprotected
add_warning(const std::string &prefix, const std::string &what)multovl::BasePipelineinlineprotected
BasePipeline()multovl::BasePipelineinline
calc_actual_overlaps()multovl::prob::ProbPipelineprotected
chrom_shufovl_map typedefmultovl::prob::ProbPipelineprotected
clear_errors()multovl::BasePipelineinlineprotected
csovl() const multovl::prob::ProbPipelineinlineprotected
csovl()multovl::prob::ProbPipelineinlineprotected
detect_overlaps()multovl::prob::ProbPipelineprotectedvirtual
errors() const multovl::BasePipelineinline
input_seq_t typedef (defined in multovl::BasePipeline)multovl::BasePipelineprotected
inputs() const multovl::BasePipelineinlineprotected
inputs()multovl::BasePipelineinlineprotected
opt_pimpl()multovl::BasePipelineinlineprotected
opt_ptr()multovl::prob::ProbPipelineinlineprotectedvirtual
ProbPipeline(int argc, char *argv[])multovl::prob::ProbPipeline
ProbPipeline()multovl::prob::ProbPipelineprotected
read_input()multovl::prob::ProbPipelineprotectedvirtual
run()multovl::BasePipeline
set_optpimpl(MultovlOptbase *optp)multovl::BasePipelineprotected
stat() const multovl::prob::ProbPipelineinlineprotected
stat()multovl::prob::ProbPipelineinlineprotectedvirtual
write_output()multovl::prob::ProbPipelineprotectedvirtual
~BasePipeline() (defined in multovl::BasePipeline)multovl::BasePipelineinlinevirtual
~ProbPipeline() (defined in multovl::prob::ProbPipeline)multovl::prob::ProbPipeline