multovl  1.3
Multiple overlaps of genomic regions
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multovl::Pipeline Member List

This is the complete list of members for multovl::Pipeline, including all inherited members.

add_all_errors(const Errors &other)multovl::BasePipelineinlineprotected
add_error(const std::string &prefix, const std::string &what)multovl::BasePipelineinlineprotected
add_warning(const std::string &prefix, const std::string &what)multovl::BasePipelineinlineprotected
BasePipeline()multovl::BasePipelineinline
chrom_multovl_map typedefmultovl::Pipelineprotected
clear_errors()multovl::BasePipelineinlineprotected
cmovl() const multovl::Pipelineinlineprotected
cmovl()multovl::Pipelineinlineprotected
detect_overlaps()multovl::Pipelineprotectedvirtual
errors() const multovl::BasePipelineinline
input_seq_t typedef (defined in multovl::BasePipeline)multovl::BasePipelineprotected
inputs() const multovl::BasePipelineinlineprotected
inputs()multovl::BasePipelineinlineprotected
opt_pimpl()multovl::BasePipelineinlineprotected
opt_ptr()=0multovl::BasePipelineprotectedpure virtual
read_input()=0multovl::BasePipelineprotectedpure virtual
run()multovl::BasePipeline
set_optpimpl(MultovlOptbase *optp)multovl::BasePipelineprotected
write_output()=0multovl::BasePipelineprotectedpure virtual
~BasePipeline() (defined in multovl::BasePipeline)multovl::BasePipelineinlinevirtual