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Inti Pedroso  committed 8d3d3ed

minor change to march new normlaisation output files

  • Participants
  • Parent commits a863629
  • Branches develop, feature/correction_gcv2 2
    1. feature/docs
    2. release/0.01

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Files changed (1)

File utilities/cnv_caller.py

     print time.ctime(), len(self.files), " files to load"
     data_files = {}
     for file in self.files:
-      table = pd.read_table(file,names=['chr','start','end','counts'],sep="\t",na_values=['inf','-inf'])
+      table = pd.read_table(file,names=['chr','start','end','coverage','counts'],sep="\t",na_values=['inf','-inf'])
       table['counts'] = table['counts'].astype(float)
       # FILTER DATA
       # TODO: this set NaN to 0 needs to change later on!!!