1. Inti Pedroso
  2. cnv-hdp-hmm

Commits

Author Commit Message Date Builds
Inti Pedroso
README.txt edited online with Bitbucket
Inti Pedroso
README.txt edited online with Bitbucket
Inti Pedroso
minor change
Branches
develop
Inti Pedroso
all bones of single position correction for GC are implemented. TODO: write to correct the counts by looping over the bam file ... thiw will be slow ... auch!
Inti Pedroso
minor changes
Branches
feature/docs
Inti Pedroso
First verion
Branches
feature/docs
Inti Pedroso
Merge branch 'develop' into feature/docs Merging to get updated code
Branches
feature/docs
Inti Pedroso
Merge branch 'feature/make_bigbed' into develop
Branches
3 branches
Inti Pedroso
test function to convert from result tables to bedGraph. Fully functioning function to produce bedGraph files
Branches
3 branches
Inti Pedroso
start ipython notebook
Branches
feature/docs
Inti Pedroso
make function stand alone
Branches
3 branches
Inti Pedroso
first version. TODO fix colour of CNV segments
Branches
3 branches
Inti Pedroso
Merge branch 'feature/post_segments' into develop
Branches
4 branches
Inti Pedroso
minor bug fixed
Branches
4 branches
Inti Pedroso
minor bug fixed
Branches
4 branches
Inti Pedroso
Merge branch 'feature/fix_cnv_segments_spotter' into develop
Branches
4 branches
Inti Pedroso
minor change
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4 branches
Inti Pedroso
remove redundant function to identify cnv segments
Branches
4 branches
Inti Pedroso
changes to detect segments
Branches
4 branches
Inti Pedroso
minor change
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4 branches
Inti Pedroso
options to re-set x-axis
Branches
4 branches
Inti Pedroso
useful files added
Branches
4 branches
Inti Pedroso
minor changes
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4 branches
Inti Pedroso
added useful comments
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4 branches
Inti Pedroso
minor change to march new normlaisation output files
Branches
4 branches
Inti Pedroso
minor change
Branches
4 branches
Inti Pedroso
Merge branch 'feature/normalize' into develop major changes on script to normalise counts by GC content in order to improve speed. it now uses pysam.cout funtion to calculate the coverage instead of pybedtool which improves speed a lot! I have simplified the general flow.
Branches
4 branches
Inti Pedroso
tidy up
Branches
4 branches
Inti Pedroso
new version of normalise script
Branches
4 branches
Inti Pedroso
rm some files
Branches
4 branches
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