PROTEOMICS ====== This repository contains some small modifications to its parent (galaxy-dist) which provide support for Proteomics data types and display applications. You can install and setup galaxy-proteomics just as for normal galaxy. To use the galaxy tools you will need to install them and their dependencies. The proteomics tools are currently available at; https://bitbucket.org/iracooke/protk-toolshed It is hoped that these will be available entirely via the galaxy toolshed. GALAXY ====== http://galaxyproject.org/ The latest information about Galaxy is always available via the Galaxy website above. HOW TO START ============ Galaxy requires Python 2.5, 2.6 or 2.7. To check your python version, run: % python -V Python 2.4.4 Start Galaxy: % sh run.sh Once Galaxy completes startup, you should be able to view Galaxy in your browser at: http://localhost:8080 You may wish to make changes from the default configuration. This can be done in the universe_wsgi.ini file. Tools are configured in tool_conf.xml. Details on adding tools can be found on the Galaxy website (linked above). Not all dependencies are included for the tools provided in the sample tool_conf.xml. A full list of external dependencies is available at: http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies
henrya80 began watching iracooke/galaxy-proteomics
bc7ed00 - Merge
0b186ed - Trackster: better attribute display for tracks created when rerunning tools.
32d1ab3 - Handle instance where BAMDataProvider iterator is None; this can occur when trying to fetch additional data.
84baec1 - Correctly handle ToolPanelSection objects when presenting the tool panel sectin redio buttons for selecting a section to contain tools installed with a tool shed repostory ...
86d9c5d - Make sure a tool shed repository has metadata before setting versions for contained tools.