Ability to bypass paraxial check for beam xp yp

[Laurie Nevay]

With a user file, we can supply xp, yp and always in the bunch base class BDSBunch we check that `sqrt(xp**2 + yp**2) < 1`. This prevents us from truly specifying 3D coordinates. We should allow a 3D xp, yp, zp to be specified or to bypass this check.