Commits

Daniel Blankenberg committed 28dd265

Fix for remove_all_gap_columns() when the one of the component's sequence is not the proper
type. This fixes an issue in dealing with MAF files when parse_e_rows = True.

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Files changed (1)

lib/bx/align/core.py

         Remove any columns containing only gaps from alignment components,
         text of components is modified IN PLACE.
         """
-        seqs = [ list( c.text ) for c in self.components ]
+        try:
+            seqs = [ list( c.text ) for c in self.components ]
+        except TypeError:
+            return
         i = 0
         text_size = self.text_size
         while i < text_size:
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