Commits

Author Commit Message Labels Comments Date
James Taylor
Fixed a bug in count_range for BinnedBitset
James Taylor
C implementation of binned bitsets.
James Taylor
Added a script for extracting the regions covered (in the reference species)
James Taylor
Fixed off by one error in intervals.Intersecter
Bob Harris
stub module that eventually will read/write LAV format alignment blocks with same interface as maf.py and axt.py
Bob Harris
(1) corrected reverse_complement (2) brought axt support up-to-snuff with maf (3) which necessitated changes to maf and core (4) added stubs for lav
James Taylor
"bed_merge_overlapping" merges all overlapping intervals in a bed file. It uses projection onto a bitset
James Taylor
Forgot the cookbook package. Fixed bitset.pyx (still in progress) so that it builds.
James Taylor
Importing everything
James Taylor
Making trunk directory
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