Commits

Anonymous committed d2df696

Skip single sequence containing blocks from CpG masking, which should take care of the index errors being thrown by the script.

Comments (0)

Files changed (1)

lib/bx/align/sitemask/cpg.py

         
     def __call__( self, block ):
         if not block: return block
+        if len(block.components) < 2:
+            return
         cpglist = list_cpg_restricted( \
             string.upper(block.components[0].text), \
             string.upper(block.components[1].text) )
         
     def __call__( self, block ):
         if not block: return block
+        if len(block.components) < 2:
+            return
         cpglist = list_cpg( \
             string.upper(block.components[0].text), \
             string.upper(block.components[1].text) )
         
     def __call__( self, block ):
         if not block: return block
+        if len(block.components) < 2:
+            return
         noncpglist = list_non_cpg( \
             string.upper(block.components[0].text), \
             string.upper(block.components[1].text) )
Tip: Filter by directory path e.g. /media app.js to search for public/media/app.js.
Tip: Use camelCasing e.g. ProjME to search for ProjectModifiedEvent.java.
Tip: Filter by extension type e.g. /repo .js to search for all .js files in the /repo directory.
Tip: Separate your search with spaces e.g. /ssh pom.xml to search for src/ssh/pom.xml.
Tip: Use ↑ and ↓ arrow keys to navigate and return to view the file.
Tip: You can also navigate files with Ctrl+j (next) and Ctrl+k (previous) and view the file with Ctrl+o.
Tip: You can also navigate files with Alt+j (next) and Alt+k (previous) and view the file with Alt+o.