James Taylor avatar James Taylor committed f37fda4

Fixes noticed by Bob.

Comments (0)

Files changed (1)

bx/align/score.py

 from Numeric import *
 
 class ScoringScheme( object ):
-    def __init__( self, gap_open, gap_extend, input_size=128, default=-100, typecode=Int16 ):
-        self.table = zeros( (input_size, input_size) )
+    def __init__( self, gap_open, gap_extend, input_size=128, default=-100, typecode=Int ):
+        self.table = zeros( (input_size, input_size), typecode=typecode )
         self.table *= default
         self.gap_open = gap_open
         self.gap_extend = gap_extend
     for i in range( ncomps ):
         for j in range( i+1, ncomps ):
             score += score_texts( scoring_scheme, a.components[i].text, a.components[j].text )
-            print "."
     return score
     
 
Tip: Filter by directory path e.g. /media app.js to search for public/media/app.js.
Tip: Use camelCasing e.g. ProjME to search for ProjectModifiedEvent.java.
Tip: Filter by extension type e.g. /repo .js to search for all .js files in the /repo directory.
Tip: Separate your search with spaces e.g. /ssh pom.xml to search for src/ssh/pom.xml.
Tip: Use ↑ and ↓ arrow keys to navigate and return to view the file.
Tip: You can also navigate files with Ctrl+j (next) and Ctrl+k (previous) and view the file with Ctrl+o.
Tip: You can also navigate files with Alt+j (next) and Alt+k (previous) and view the file with Alt+o.