Source

bx-python / script_tests / bnMapper_tests.py

Diff from to

script_tests/bnMapper_tests.py

     command_line = "./scripts/bnMapper.py -fBED12 ./test_data/epo_tests/hpeaks.bed ./test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.chain"
     output_stdout = base.TestFile( filename="./test_data/epo_tests/hpeaks.mapped.bed12" )
 
+class Test3( base.BaseScriptTest, unittest.TestCase ):
+    command_line = "./scripts/bnMapper.py -g9 ./test_data/epo_tests/hpeaks.bed ./test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.chain"
+    output_stdout = base.TestFile( filename="./test_data/epo_tests/hpeaks.mapped.bed4" )
+
+class Test4( base.BaseScriptTest, unittest.TestCase ):
+    command_line = "./scripts/bnMapper.py -g3 ./test_data/epo_tests/hpeaks.bed ./test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.chain"
+    output_stdout = base.TestFile( filename="./test_data/epo_tests/hpeaks.mapped.nopeak2.bed4" )
+
+class Test5( base.BaseScriptTest, unittest.TestCase ):
+    command_line = "./scripts/bnMapper.py -g9 -t0.67 ./test_data/epo_tests/hpeaks.bed ./test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.chain"
+    output_stdout = base.TestFile( filename="./test_data/epo_tests/hpeaks.mapped.bed4" )
+
+class Test6( base.BaseScriptTest, unittest.TestCase ):
+    command_line = "./scripts/bnMapper.py -g9 -t0.7 ./test_data/epo_tests/hpeaks.bed ./test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.chain"
+    output_stdout = base.TestFile( filename="./test_data/epo_tests/hpeaks.mapped.nopeak2.bed4" )
+
 unittest.main()