Source

bx-python / setup.py

Diff from to
             extensions.append( Extension( "bx.bbi.bbi_file", [ "lib/bx/bbi/bbi_file.pyx" ], include_dirs=[numpy.get_include()] ) )
             extensions.append( Extension( "bx.bbi.bigwig_file", [ "lib/bx/bbi/bigwig_file.pyx" ], include_dirs=[numpy.get_include()] ) )
             extensions.append( Extension( "bx.bbi.bigbed_file", [ "lib/bx/bbi/bigbed_file.pyx" ], include_dirs=[numpy.get_include()] ) )
+            # EPO and Chain arithmetics and IO speedups
+            extensions.append( Extension( "bx.align._epo", [ "lib/bx/align/_epo.pyx" ], include_dirs=[numpy.get_include()] ) )
 
         # Reading UCSC bed and wiggle formats
         extensions.append( Extension( "bx.arrays.bed", [ "lib/bx/arrays/bed.pyx" ] ) )