Source

bx-python / lib / bx / seq / qdna.py

Author Commit Message Labels Comments Date
mruffalo
Raise exceptions instead of raw strings for issue #35
Bob Harris
added qdna (partial) write capability; writing codebooks is still not supported (due to laziness)
James Taylor
Adding module / package level doc comments to everything.
Bob Harris
added writer (for fasta only; stubs for nib and qdna)
Bob Harris
Bob Harris
added support for codebook, as separate file or embedded in the quantum sequence file
Bob Harris
sequence readers are now supported (i.e. iterate over sequences in a fasta file)
Bob Harris
specific sequence formats are now subclasses of SeqFile, which provides common functionality like reverse-complement
Bob Harris
sequence formats have a commonality now, like alignment formats (will add fasta later)
Bob Harris
support for quantum DNA files