Getting Started: Indexing MAFs
Sorry for posting such a silly newbie question, but for the life of me, I can't figure out how to generate a MAF index file. Per your example, I need to run bzip-table, but neither this file nor the folder are part of my bx-python installation:
henduck% time ~/work/seek-bzip2/bzip-table < chrY.maf.bz2 > chrY.maf.bz2t
I've installed it on Mac OSX. Perhaps it didn't install correctly? Am I missing something? Any help is appreciated. Thank you.
Chris Fuller UCSF email@example.com