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File bnMapper.wiki

 This page describes how to use bnMapper for mapping genomic features.
 
 === Setup ===
-If you haven't done so, install numpy and bx-python (instructions on ??). Upon successful  installation you should find, among other scripts, bnMapper.py and out_to_chain.py in the scripts directory. You can run both scripts without arguments or with the -h option to get a usage message. 
+If you haven't done so, install numpy and bx-python (instructions on how to install bx-python are here [[HowToInstall]]). Upon successful  installation you should find, among other scripts, bnMapper.py and out_to_chain.py in the scripts directory. You can run both scripts without arguments or with the -h option to get a usage message. 
 
 === Out to Chain coversion ===
 The out_to_chain.py script is a simple format converter that expects in input an EPO alignment file and converts it into the UCSC chain format (http://genome.ucsc.edu/goldenPath/help/chain.html).