Implementation of the ESPERR method for training classification models on multiple alignments and creating scores (e.g. Regulatory Potential)
376bb66 - rp_score_maf.py: improve coordinate handling. Previously output position was the start of the window plus half the window size, which could become inaccurate for windows containing ...
38d79d7 - Update README
1304865 - Adding .hgignore
8e40774 - Import fix for doc_optparse
3659a38 - adding distribute_setup.py
8221678 - A start toward modernization
edddc78 - Updates for numpy and fixes for more modern Pyrex.
ec7d44a - generated code for standard.pyx, fix incompatibility with newer pyrex
fb09637 - Some fixes.