Bitbucket is a code hosting site with unlimited public and private repositories. We're also free for small teams!

Examples of running ESPERR to produce Regulatory Potential scores.

The Makefile in this directory contains a rule to build a Python
virtualenv that contains all of the bx-python and esperr code
needed. Just running "make esperr-virtualenv" should get 
everything set. 

Subdirectories contain rules for producing scores from specific
multiple alignments.

Alignments need to be downloaded separately and indexed with

If you want scores in BigWig format you will also need to have
installed UCSC's wigToBigWig and twoBitInfo (or provide the
sizes file in some other way). 

Recent activity

Tip: Filter by directory path e.g. /media app.js to search for public/media/app.js.
Tip: Use camelCasing e.g. ProjME to search for
Tip: Filter by extension type e.g. /repo .js to search for all .js files in the /repo directory.
Tip: Separate your search with spaces e.g. /ssh pom.xml to search for src/ssh/pom.xml.
Tip: Use ↑ and ↓ arrow keys to navigate and return to view the file.
Tip: You can also navigate files with Ctrl+j (next) and Ctrl+k (previous) and view the file with Ctrl+o.
Tip: You can also navigate files with Alt+j (next) and Alt+k (previous) and view the file with Alt+o.