GALAXY ====== http://galaxyproject.org/ The latest information about Galaxy is always available via the Galaxy website above. HOW TO START ============ Galaxy requires Python 2.5, 2.6 or 2.7. To check your python version, run: % python -V Python 2.7.3 Start Galaxy: % sh run.sh Once Galaxy completes startup, you should be able to view Galaxy in your browser at: http://localhost:8080 You may wish to make changes from the default configuration. This can be done in the universe_wsgi.ini file. Tools are configured in tool_conf.xml. Details on adding tools can be found on the Galaxy website (linked above). Not all dependencies are included for the tools provided in the sample tool_conf.xml. A full list of external dependencies is available at: http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies
2abd374 - conditional parameters: fix value_ref stuff for compatibility with multiple values
52c8e7c - conditional parameters: allow multiple values for a given case ('when').
80ab774 - Update login methods in twilltestcase to be more robust.
2a98acf - Fix for setting metadata externally when running functional tests.
4590977 - Fix for incorrect template inheritance causing the tool shed base_panels to be displayed in the galaxy app when logging in after logout.
cecfc6a - Fix for incorrect template inheritance causing the tool shed base_panels to be displayed in the galaxy app when logging in after logout.
a6720cf - Password security: use PBKDF2 scheme with sha256 for any new/changed passwords. Scheme is encoded in the database field to allow other schemes to be used ...
0899ad3 - Fix more broken tooltips from the tipsy->bootstrap.tooltip() swap
fe1be67 - Add tooltips for (un)linking icon on run workflow page.
b22d70a - Update multiselect tooltip, now functional. Was still using tipsy's 'original-title' attribute.
2598654 - Disable select2 for Input Dataset steps on the run workflow page.
02822f2 - Temporarily disable database_connection in metadata.py until a better solution is found
c823b14 - Remove debug filtering.
d207aa9 - When deleting a history and marking associated jobs deleted, first check that there is a job to mark.
e7feb8e - Update GenomeSpace tools to use __user__ as needed.
45a70ed - Provide user to tools as __user__.
hg strip 75451ff28ffd on your local copy
f3b1de0 - Main app has to be called galaxy since it is hardcoded in too many places. Starting to try and untangle webapp references
78e47fc - trying to untangle the webapp mess
a323789 - fix more references to /webapps/galaxy
53d6cb2 - Use inheritence to for user controller in community app rather than hackery
75451ff - Moving main webapp templates out of root directory, fixing some recursive imports