Commits

Show all
Author Commit Message Labels Comments Date
James Taylor
Cleaning up controller imports
James Taylor
Extracting add ui/api controllers methods up to the framework level
James Taylor
Moving main webapp out of framework directory
jeremy goecks
Fix Cuffdiff parameter group naming.
Carl Eberhard
fixes to ae57c837ab03
jeremy goecks
Circster: add support for drawing a generic quantitative track and draw summary tree data using a single path.
Carl Eberhard
fixed(?) weird permissions on jquery-ui; scatterplot: major adjustments;
jeremy goecks
Small additions based on bdd35af2a18a
jeremy goecks
Viz framework: (a) push data provider creation to registry to simplify provider creation; (b) fix bugs in filters module naming; (c) enable deeper sampling in BBI data provider.
jeremy goecks
Push data sources/converter methods from controller mixin to dataset object.
Greg Von Kuster
Add the ability to review tools migration stages that are available for the current Galaxy instance.
jeremy goecks
Place track filters in their own file.
jeremy goecks
Add requireJS support for data, visualization, tools and update dependencies.
Dannon Baker
Workflows: Viewing and Downloading of workflows with missing tools now handled gracefully.
jeremy goecks
Add utility function to circster that determines whether an element is visible.
Greg Von Kuster
Display warning or error message if attempting to install tool dependencies defined in a tool shed repository when the tool_dependency_dir config setting is not set in the Galaxy config.
Dannon Baker
Workflows: Fix for 0ba260ea43c4 to correctly display error message when attempting to run a workflow missing tools.
Greg Von Kuster
Fixes for viewing tool metadata in a tool shed repository for tools the require data index (.loc) files.
Greg Von Kuster
Fix for viewing tool metadata defined for tools in a repository that use the Galaxy ToolDataTableManager.
jeremy goecks
Circster: render wiggle data as a single path rather than many small paths.
Greg Von Kuster
Fix and enhance the features for resetting a repository that encounted errors during the cloning process so the Galaxy admin can make another attempt to install it.
Dannon Baker
Revert previous change to message.mako for now -- we do use html in the message box elsewhere (links, etc) and this breaks them.
Dannon Baker
Prevent reflective XSS through message display.
Dannon Baker
Cloud Launch - Fix for rare instance udpate() that happens when (rarely) Amazon doesn't have the instance fully registered before update() is called.
jeremy goecks
Fix bug in setting dbkey for new track browser.
Dannon Baker
Fix create_all_fasta_loc to work when inspect_dir is not set.
jeremy goecks
Tophat2 wrapper fixes. Thanks to Jim Johnson and Lance Parsons.
jeremy goecks
Wrap Sweepster in a requireJS module and add needed module qualifications. Pack scripts.
Scott McManus
Fixed call to check_tool_output for TaskWrapper.
Greg Von Kuster
Fix for getting updates for tool shed repositories installed into a local Galaxy instance.
  1. Prev
  2. Next