Commits

Author Commit Message Labels Comments Date
John Duddy
Correct indentation, only access summary if it is set!
John Duddy
Fix API code errors, add ability to set ldda associations, fixed misc error in util
Greg Von Kuster
Enhance tool searching in tool shed repositories to enable multiple values in any of tool_id, tool_name, tool_version. In the tool shed search form, taking advantage of this feature requires comma-separated lists to be entered in the form fields.
Nate Coraor
Merged in jmchilton/umn-galaxy-central (pull request #10)
John Chilton
Re merged with galaxy central.
John Chilton
Merged galaxy-central.
John Chilton
Small refactoring to the code used by job runners and job wrapper to
Dannon Baker
Workflows: Fix for 5cfec3f4f17c to accommodate workflows with 'input dataset' steps.
Greg Von Kuster
Add the ability to upload exported Galaxy workflow files. Makew a first pass at fixing bugs when importing a workflow into a Galaxy instance that does not have all of the required tools. This code is still full of bugs.
Nate Coraor
Remove incorrect #-S /bin/bash (SGE shell override) from drmaa job runner. If you were depending on this to get jobs to run on your SGE cluster under bash, please add '-S /bin/bash' to your Galaxy user's ~/.sge_request.
Greg Von Kuster
Clarify tool searches in the tool shed. Searches are retricted to only tools that properly load in Galaxy.
Greg Von Kuster
Sort the list of tool shed repositories by name when populating the grid for matching tools, but eliminate all grid column sorting.
Greg Von Kuster
Keep track ot the changeset revision when viewing tool shed repositories retrieved from tool searches.
Greg Von Kuster
Add the ability to search for tools within tool shed repositories by any combination of tool id, name and version (exact or partial matches).
jeremy goecks
Make implicit dataset conversion work with changes in 1827729ed37e.
jeremy goecks
Force absolute path when creating temporary directory used when importing histories. Fixes #667
Dannon Baker
Merge
Dannon Baker
Pull and merge of Task overhaul.
John Duddy
add FQTOC datatype to drive file splitting
John Duddy
Fix missing columns for Task, add migration to add ldda for associated types
John Duddy
Upgrade of splitting code to do splitting in the tasks versus in the Galaxy process
John Duddy
Merge
John Duddy
Fix issues related to splitting multiple inputs and handling
John Duddy
Merge
John Duddy
Add ability to split compressed input
John Duddy
Remove zcat + gzip -c for merging gz files. Go with cat for now
jdu...@Bruno-Proto6.illumina.com
Added new "multi" parallelism option for tools
jeremy goecks
Remove duplicate history links in copy datasets done message.
jeremy goecks
Handle scores with value '.' in data providers.
jeremy goecks
When copying datasets, provide links to target histories.
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