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Some peptides are missed in mapping results.
Issue #17
open
Hi, I'm trying Peptigram, but some of my peptides are missed in the mapping results. It seems that shorter peptides such as 5-6 AA or shorter are likely missed. I would be grateful if I could have any tips to resolve this issue. Attached are an example file and its mapping result; 11 peptides from the same region are listed. but peptides with 6 AA or shorter cannot be found in the mapping result.
Comments (2)
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repo owner
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repo owner
small peptides with positions
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Hi,
The problem come from your file, the
startandendpositions were set to 0. I modified your file and added the positions and it works (http://bioware.ucd.ie/peptigram/job/40b7jq42kfe0/P02668)I will add safeguards to avoid this problem in the future.