phosphorylation
Issue #36
new
Dear dr. Manguy, a request for the use of Peptigram. I have analyzed a proteolytic mixture of caseins. I am able to visualtize the results with Peptigram, using as input the peptides.txt from Andromeda (MaxQuant). However, the output of phosphopeptides is in a different file (Phopho(ST)Sites.txt). Is it possible to visualize also this file with Peptigram or (even better) to merge the two files (peptides.txt and Phospho(ST)Sites.txt)? Thank you, Gianluca
Comments (1)
-
repo owner
- Log in to comment
Dear Gianluca,
Unfortunately Peptigram can only read the peptide files. One thing that could be done on your side is to transform phosphorylated serines and threonines from S/T to a non amino acid character such as X. The X would be displayed in the peptide alignment map in the phosphorylated peptide sequence below the precursor protein with the S or T.
Sadly I do not have the resources to maintain and continue the development of Peptigram at this time to add these functionalities.