HMMER - profile hidden Markov models for biological sequence analysis
Version 3.0a2; March 2009
Copyright (C) 2009 Howard Hughes Medical Institute.

HMMER searches biological sequence databases for homologous sequences,
using either single sequences or multiple sequence alignments as
queries. HMMER implements a technology called "profile hidden Markov
models" (profile HMMs). HMMER is the software engine underlying many
protein family domain databases and large-scale annotation pipelines,
including the Pfam and SMART databases.

Other files to read in the top-level source directory:

    INSTALL          Brief installation instructions.
    Userguide.pdf    The HMMER User's Guide.
    COPYRIGHT        Copyright and license information.
    LICENSE          The GNU General Public License (GPLv3).

To get started after installation, see the Tutorial section in the
HMMER User's Guide (Userguide.pdf).

Sean Eddy
HHMI Janelia Farm Research Campus