Source

Cistrome-Harvard-dev2 / cistromescripts / bioc.R

source("http://bioconductor.org/biocLite.R")
biocLite("affy")
biocLite("AffyExpress")
biocLite("Category")
biocLite("Biobase")
biocLite("graph")
biocLite("annotate")
biocLite("ArrayExpress")
biocLite("GEOquery")
biocLite("oligo")
biocLite("geneplotter")
biocLite("gcrma")
biocLite("maqcExpression4plex")
biocLite("genefilter")
biocLite("multtest")
biocLite("limma")
biocLite("pd.hg18.60mer.expr") # Platform Design Info for NimbleGen hg18_60mer_expr
biocLite("annaffy")
biocLite("GO.db") 
biocLite("GOstats") # requieres libxml2-dev installed! sudo apt-get install libxml2-dev
biocLite("hgu133a")
biocLite("hgu133b")
biocLite("hgu133plus2.db")
biocLite("hgu95av2")
biocLite("mouse430a2.db")
biocLite("celegans.db")
biocLite("drosophila2.db")
biocLite("org.Hs.eg.db")
biocLite("org.Mm.eg.db")
biocLite("org.Ce.eg.db")
biocLite("org.Dm.eg.db")
biocLite("gplots")
biocLite("seqLogo")
save.image()