CMakeError.log
Professor: Hello,
when i use [chaiqz@tns3 build]$ CC=gcc CXX=g++ Fortan=gfortran /home/chaiqz/local/cmake-3.1.0-Linux-x86_64/bin/cmake -DENABLE_MOVIE=no -DSKYNET_MATRIX_SOLVER=pardiso -DCMAKE_INSTALL_PREFIX=~/skynet/install ..
the output are:
-- The CXX compiler identification is GNU 4.9.0
-- The C compiler identification is GNU 4.9.0
-- The Fortran compiler identification is GNU
-- Check for working CXX compiler: /usr/local/bin/g++
-- Check for working CXX compiler: /usr/local/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/local/bin/gcc
-- Check for working C compiler: /usr/local/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Found HDF5: /home/chaiqz/local/hdf5-1.12.0-linux-centos7-x86_64-static/lib/libhdf5_cpp.a;/home/chaiqz/local/hdf5-1.12.0-linux-centos7-x86_64-static/lib/libhdf5.a;/home/chaiqz/local/hdf5-1.12.0-linux-centos7-x86_64-static/lib/libsz.a;/home/chaiqz/local/hdf5-1.12.0-linux-centos7-x86_64-static/lib/libz.a;/usr/lib64/libdl.so;/usr/lib64/libm.so
-- Found GSL: /home/chaiqz/lib/gsl/lib/libgsl.so;/home/chaiqz/lib/gsl/lib/libgslcblas.so
-- Boost version: 1.74.0
-- Found the following Boost libraries:
-- system
-- filesystem
-- serialization
-- Found SWIG: /home/chaiqz/lib/swig/bin/swig (found suitable version "3.0.0", minimum required is "3")
-- Found PythonLibs: /usr/local/lib/libpython2.7.a (found suitable version "2.7.14", minimum required is "2.6")
-- Found Pardiso : /home/chaiqz/lib/libpardiso600-GNU720-X86-64.so;/home/chaiqz/lib/libpardiso600-GNU720-X86-64.so
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- A library with BLAS API found.
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP Fortran flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found OpenMP: -fopenmp
--
--
-- Configuration options:
--
-- CMAKE_CXX_FLAGS: -Wall -Wextra -std=c++11 -g -fPIC -DSKYNET_USE_PARDISO
-- CMAKE_CXX_LINK_FLAGS:
-- CMAKE_CXX_FLAGS_DEBUG: -g -DDEBUG
-- CMAKE_CXX_FLAGS_RELEASE: -O3 -DNDEBUG
-- CMAKE_Fortran_FLAGS: -g -fPIC
-- CMAKE_Fortran_LINK_FLAGS:
-- CMAKE_Fortran_FLAGS_DEBUG: -g
-- CMAKE_Fortran_FLAGS_RELEASE: -O3
--
--
-- Matrix solver: pardiso (sparse)
-- SWIG: enabled
-- making movies: disabled
--
--
-- Configuring done
-- Generating done
-- Build files have been written to: /home/chaiqz/Skynet/build
i found the build/CMakeError.log is
Determining if the pthread_create exist failed with the following output: Change Dir: /home/chaiqz/Skynet/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTryCompileExec2471864884/fast"
/usr/bin/gmake -f CMakeFiles/cmTryCompileExec2471864884.dir/build.make CMakeFiles/cmTryCompileExec2471864884.dir/build
gmake[1]: Entering directory /home/chaiqz/Skynet/build/CMakeFiles/CMakeTmp'
/home/chaiqz/local/cmake-3.1.0-Linux-x86_64/bin/cmake -E cmake_progress_report /home/chaiqz/Skynet/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec2471864884.dir/CheckSymbolExists.c.o
/usr/local/bin/gcc -o CMakeFiles/cmTryCompileExec2471864884.dir/CheckSymbolExists.c.o -c /home/chaiqz/Skynet/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c
Linking C executable cmTryCompileExec2471864884
/home/chaiqz/local/cmake-3.1.0-Linux-x86_64/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec2471864884.dir/link.txt --verbose=1
/usr/local/bin/gcc CMakeFiles/cmTryCompileExec2471864884.dir/CheckSymbolExists.c.o -o cmTryCompileExec2471864884 -rdynamic
CMakeFiles/cmTryCompileExec2471864884.dir/CheckSymbolExists.c.o: In functionmain':
CheckSymbolExists.c:(.text+0x16): undefined reference to pthread_create'
collect2: error: ld returned 1 exit status
gmake[1]: *** [cmTryCompileExec2471864884] Error 1
gmake[1]: Leaving directory/home/chaiqz/Skynet/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTryCompileExec2471864884/fast] Error 2
File /home/chaiqz/Skynet/build/CMakeFiles/CMakeTmp/CheckSymbolExists.c: / / #include <pthread.h>
int main(int argc, char* argv) { (void)argv; #ifndef pthread_create return ((int)(&pthread_create))[argc]; #else (void)argc; return 0; #endif }
Determining if the function pthread_create exists in the pthreads failed with the following output: Change Dir: /home/chaiqz/Skynet/build/CMakeFiles/CMakeTmp
Run Build Command:"/usr/bin/gmake" "cmTryCompileExec3554605195/fast"
/usr/bin/gmake -f CMakeFiles/cmTryCompileExec3554605195.dir/build.make CMakeFiles/cmTryCompileExec3554605195.dir/build
gmake[1]: Entering directory /home/chaiqz/Skynet/build/CMakeFiles/CMakeTmp'
/home/chaiqz/local/cmake-3.1.0-Linux-x86_64/bin/cmake -E cmake_progress_report /home/chaiqz/Skynet/build/CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec3554605195.dir/CheckFunctionExists.c.o
/usr/local/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/cmTryCompileExec3554605195.dir/CheckFunctionExists.c.o -c /home/chaiqz/local/cmake-3.1.0-Linux-x86_64/share/cmake-3.1/Modules/CheckFunctionExists.c
Linking C executable cmTryCompileExec3554605195
/home/chaiqz/local/cmake-3.1.0-Linux-x86_64/bin/cmake -E cmake_link_script CMakeFiles/cmTryCompileExec3554605195.dir/link.txt --verbose=1
/usr/local/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/cmTryCompileExec3554605195.dir/CheckFunctionExists.c.o -o cmTryCompileExec3554605195 -rdynamic -lpthreads
/usr/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
gmake[1]: *** [cmTryCompileExec3554605195] Error 1
gmake[1]: Leaving directory/home/chaiqz/Skynet/build/CMakeFiles/CMakeTmp'
gmake: *** [cmTryCompileExec3554605195/fast] Error 2
Then "make -j install" as attachments,, could you help me? thank you very much.
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