Commits

Author Commit Message Labels Comments Date
John Chilton
Improving string vs. bool handling of add_to_menu API option in workflow controller.
Branches
workflow_import_menu_api
John Chilton
Augment workflow import api to allow add_to_menu argument which (when true) adds imported workflow to user's workflow menu. Augment api example script to take in an optional fourth parameter --add_to_menu to enable this.
Branches
workflow_import_menu_api
jeremy goecks
Add fugue hammer icons.
jeremy goecks
Trackster: use hammer for tool icon instead of toolbox.
jeremy goecks
Trackster: better message when indexing data.
jeremy goecks
Make running tools compatible with 4a7374937251
jeremy goecks
Match CSS class name with icon name.
Daniel Blankenberg
Add GATK tools to tool_conf.xml.main.
Nate Coraor
Change the hardcoding of UCSC servers to a config file option, and remove the dependence on ucsc_display_sites, so any display server can be allowed. If you've modified your remoteuser.py, beware the merge.
Greg Von Kuster
More fixes for handling mor ethan one non-shed tool anel config when installing tools migrated from the distrobution to the tool shed.
jeremy goecks
Ensure reference track does not scroll.
Greg Von Kuster
Use an odict instead of a dict when acquuiring elements for generating entries for the migrated_tools_conf.xml from the InstallManager, and handle multiple proprietary non-shed tool panel configs with the InstallManger.
Greg Von Kuster
Update the integrated_toon_conf.xml file only if a new config setting is True. This keeps things that start up the app (like functional tests) from updating the file.
jeremy goecks
Trackster: make reference track compatible with changeset 8e9d2b492c4c.
jeremy goecks
Trackster: prevent resizing of label and reference tracks.
Greg Von Kuster
When uploading a tarball to a tool shed repository, eliminate as many undesired directories (.svn, .git, .hg, .cvs) and files (hgrc, .hg_archival.txt, .DS_Store) as possible from the archive before committing the contents to the repository.
Greg Von Kuster
Fix for rerunning a tool where the correct id / version are available.
Greg Von Kuster
Check potential tool config files to ensure they are text before attempting to load them in tool shed repositories, and a fix handling for tools contained in a repository that don't peoperly load into Galaxy because they are missing a required entry in the tool_data_table.conf file.
jeremy goecks
Merge.
jeremy goecks
Update converter name to be more descriptive.
jeremy goecks
Another config file addition to .hgignore
jeremy goecks
Fix feature popup functionality broken in 4a7374937251 by separating track content into tiles and overlay and using different CSS rules to manage them. Pack trackster script.
jeremy goecks
Update .hgignore to include new config files, tool data, and jars.
jeremy goecks
Trackster: enable resizing of feature tracks. Added generic framework for resizing tracks.
Greg Von Kuster
Handle tool versions with job reruns.
jeremy goecks
Clean up temp files.
Dannon Baker
Workflows: Add run workflow directly to the editor's menu.
jeremy goecks
Trackster: bug fixes for read filtering.
jeremy goecks
Enable fasta_to_len conversion to use only first word in title; this is standards compliant and used by default for automatic conversion.
Dannon Baker
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Branches
import_workflow_api_script
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