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Updated all code files to include the proper Apache 2 license with Vanderbilt University as the copyright holder.

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+Apache License, Version 2.0
+
+Apache License
+Version 2.0, January 2004
+http://www.apache.org/licenses/
+
+TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+1. Definitions.
+
+"License" shall mean the terms and conditions for use, reproduction, and distribution as defined by Sections 1 through 9 of this document.
+
+"Licensor" shall mean the copyright owner or entity authorized by the copyright owner that is granting the License.
+
+"Legal Entity" shall mean the union of the acting entity and all other entities that control, are controlled by, or are under common control with that entity. For the purposes of this definition, "control" means (i) the power, direct or indirect, to cause the direction or management of such entity, whether by contract or otherwise, or (ii) ownership of fifty percent (50%) or more of the outstanding shares, or (iii) beneficial ownership of such entity.
+
+"You" (or "Your") shall mean an individual or Legal Entity exercising permissions granted by this License.
+
+"Source" form shall mean the preferred form for making modifications, including but not limited to software source code, documentation source, and configuration files.
+
+"Object" form shall mean any form resulting from mechanical transformation or translation of a Source form, including but not limited to compiled object code, generated documentation, and conversions to other media types.
+
+"Work" shall mean the work of authorship, whether in Source or Object form, made available under the License, as indicated by a copyright notice that is included in or attached to the work (an example is provided in the Appendix below).
+
+"Derivative Works" shall mean any work, whether in Source or Object form, that is based on (or derived from) the Work and for which the editorial revisions, annotations, elaborations, or other modifications represent, as a whole, an original work of authorship. For the purposes of this License, Derivative Works shall not include works that remain separable from, or merely link (or bind by name) to the interfaces of, the Work and Derivative Works thereof.
+
+"Contribution" shall mean any work of authorship, including the original version of the Work and any modifications or additions to that Work or Derivative Works thereof, that is intentionally submitted to Licensor for inclusion in the Work by the copyright owner or by an individual or Legal Entity authorized to submit on behalf of the copyright owner. For the purposes of this definition, "submitted" means any form of electronic, verbal, or written communication sent to the Licensor or its representatives, including but not limited to communication on electronic mailing lists, source code control systems, and issue tracking systems that are managed by, or on behalf of, the Licensor for the purpose of discussing and improving the Work, but excluding communication that is conspicuously marked or otherwise designated in writing by the copyright owner as "Not a Contribution."
+
+"Contributor" shall mean Licensor and any individual or Legal Entity on behalf of whom a Contribution has been received by Licensor and subsequently incorporated within the Work.
+
+2. Grant of Copyright License.
+
+Subject to the terms and conditions of this License, each Contributor hereby grants to You a perpetual, worldwide, non-exclusive, no-charge, royalty-free, irrevocable copyright license to reproduce, prepare Derivative Works of, publicly display, publicly perform, sublicense, and distribute the Work and such Derivative Works in Source or Object form.
+
+3. Grant of Patent License.
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+Subject to the terms and conditions of this License, each Contributor hereby grants to You a perpetual, worldwide, non-exclusive, no-charge, royalty-free, irrevocable (except as stated in this section) patent license to make, have made, use, offer to sell, sell, import, and otherwise transfer the Work, where such license applies only to those patent claims licensable by such Contributor that are necessarily infringed by their Contribution(s) alone or by combination of their Contribution(s) with the Work to which such Contribution(s) was submitted. If You institute patent litigation against any entity (including a cross-claim or counterclaim in a lawsuit) alleging that the Work or a Contribution incorporated within the Work constitutes direct or contributory patent infringement, then any patent licenses granted to You under this License for that Work shall terminate as of the date such litigation is filed.
+
+4. Redistribution.
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+You may reproduce and distribute copies of the Work or Derivative Works thereof in any medium, with or without modifications, and in Source or Object form, provided that You meet the following conditions:
+
+   1. You must give any other recipients of the Work or Derivative Works a copy of this License; and
+   2. You must cause any modified files to carry prominent notices stating that You changed the files; and
+   3. You must retain, in the Source form of any Derivative Works that You distribute, all copyright, patent, trademark, and attribution notices from the Source form of the Work, excluding those notices that do not pertain to any part of the Derivative Works; and
+   4. If the Work includes a "NOTICE" text file as part of its distribution, then any Derivative Works that You distribute must include a readable copy of the attribution notices contained within such NOTICE file, excluding those notices that do not pertain to any part of the Derivative Works, in at least one of the following places: within a NOTICE text file distributed as part of the Derivative Works; within the Source form or documentation, if provided along with the Derivative Works; or, within a display generated by the Derivative Works, if and wherever such third-party notices normally appear. The contents of the NOTICE file are for informational purposes only and do not modify the License. You may add Your own attribution notices within Derivative Works that You distribute, alongside or as an addendum to the NOTICE text from the Work, provided that such additional attribution notices cannot be construed as modifying the License.
+
+You may add Your own copyright statement to Your modifications and may provide additional or different license terms and conditions for use, reproduction, or distribution of Your modifications, or for any such Derivative Works as a whole, provided Your use, reproduction, and distribution of the Work otherwise complies with the conditions stated in this License.
+
+5. Submission of Contributions.
+
+Unless You explicitly state otherwise, any Contribution intentionally submitted for inclusion in the Work by You to the Licensor shall be under the terms and conditions of this License, without any additional terms or conditions. Notwithstanding the above, nothing herein shall supersede or modify the terms of any separate license agreement you may have executed with Licensor regarding such Contributions.
+
+6. Trademarks.
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+This License does not grant permission to use the trade names, trademarks, service marks, or product names of the Licensor, except as required for reasonable and customary use in describing the origin of the Work and reproducing the content of the NOTICE file.
+
+7. Disclaimer of Warranty.
+
+Unless required by applicable law or agreed to in writing, Licensor provides the Work (and each Contributor provides its Contributions) on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied, including, without limitation, any warranties or conditions of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A PARTICULAR PURPOSE. You are solely responsible for determining the appropriateness of using or redistributing the Work and assume any risks associated with Your exercise of permissions under this License.
+
+8. Limitation of Liability.
+
+In no event and under no legal theory, whether in tort (including negligence), contract, or otherwise, unless required by applicable law (such as deliberate and grossly negligent acts) or agreed to in writing, shall any Contributor be liable to You for damages, including any direct, indirect, special, incidental, or consequential damages of any character arising as a result of this License or out of the use or inability to use the Work (including but not limited to damages for loss of goodwill, work stoppage, computer failure or malfunction, or any and all other commercial damages or losses), even if such Contributor has been advised of the possibility of such damages.
+
+9. Accepting Warranty or Additional Liability.
+
+While redistributing the Work or Derivative Works thereof, You may choose to offer, and charge a fee for, acceptance of support, warranty, indemnity, or other liability obligations and/or rights consistent with this License. However, in accepting such obligations, You may act only on Your own behalf and on Your sole responsibility, not on behalf of any other Contributor, and only if You agree to indemnify, defend, and hold each Contributor harmless for any liability incurred by, or claims asserted against, such Contributor by reason of your accepting any such warranty or additional liability.
+
+END OF TERMS AND CONDITIONS
 intersphinx_mapping = {'http://docs.python.org/dev': None,
                        'http://networkx.lanl.gov/': None}
 
-autodoc_member_order = 'groupwise'
+autodoc_member_order = 'groupwise'
+
+show_authors = True

exp/decorating.py

+# -*- coding: utf-8 -*-
+#
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
+
 from decorator import decorator
 from inspect import getargspec, isfunction, ismethod
 from hornet.event import *

exp/hornet_experimental/corenetwork.pyx

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Important core classes for the network. Due to high usage, this module
 can be compiled into machine code with Cython for improved performance.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 
 class EdgeDetail(object):

exp/hornet_experimental/job.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """
 HORNET provides a system for queueing and distributing CPU intensive tasks.
 The system escapes allows scaling proportional to the number of available CPUs.
 The jobs can even be distributed to remote computers.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 
 from __future__ import with_statement

exp/hornet_experimental/montecarlo.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+"""
 
-
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
 def monte_carlo(graph, max_trial_size, prune_filter, metric):
     #TODO remove filter size
     #rgraphs = []

exp/hornet_experimental/network.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Network API provides primitives for interacting a network.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 
 from __future__ import division

exp/hornet_experimental/networkplot.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
+"""
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
 import logging
 import networkx as net
 import pylab

exp/hornet_experimental/networkstats.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
+"""
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
 from __future__ import division
 import logging
 

exp/hornet_experimental/pubmed.py

+# -*- coding: utf-8 -*-
+#
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
+"""
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
+
 import logging
 import operator
 import numpy

exp/tests_experimental/test_network.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
 from __future__ import division
 
 import doctest
     license = release.license,
     packages = find_packages(SRC_DIR),
     package_dir = {'': SRC_DIR},
+    classifiers = [
+      'License :: OSI Approved :: Apache Software License',
+      ],
     #test_suite = 'nose.collector',
     #install_requires = ['matplotlib', 'numpy', 'processing', 'decorator',
     #                    'networkx', 'wxPython', 'sqlalchemy'], #'configobj', 

src/hornet/__init__.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Healthcare Organization Relational Network Extraction Toolkit.
+
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 
 import matplotlib; matplotlib.use('Agg')

src/hornet/application.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Primary objects for running and configuring HORNET. 
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 from hornet.event import ProcessingStart
 from hornet.util import make_periods

src/hornet/contrib/__init__.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
-"""Package of the official HORNET plugins."""        
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
+"""Package of the official HORNET plugins.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""        

src/hornet/contrib/edgeage.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
 """Plugin that tests the number of graphs that each edge exists in. 
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 from __future__ import division
 from collections import defaultdict

src/hornet/contrib/graphpersistence.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2009 John Paulett (john.paulett -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Allows graphs to be serialized/deserialized to disk, prevent unnecessary
 computations every time analyses need to be run on an unchanging network.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 from hornet.event import GraphsReady, ProcessingStart
 from hornet.file import serialize, deserialize, join, list_dir

src/hornet/contrib/networkabstractor.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
+"""
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
+
 from __future__ import division
 from collections import defaultdict
 from hornet.contrib.networkbuilder import NodeLookup, BuildRunner

src/hornet/contrib/networkbuilder.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
+"""
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
+
 from __future__ import division, with_statement
 from hornet.event import GraphsReady, ProcessingStart
 from hornet.file import read_csv, write_csv, serialize, deserialize, join

src/hornet/contrib/nodedistribution.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
+"""
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
 
 from hornet.event import GraphsReady
 from hornet.file import write_csv

src/hornet/contrib/ruleminer.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
 """Set of plugins for conducting association rule mining on a relational 
 network.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 from __future__ import division
 from collections import defaultdict

src/hornet/contrib/rulethreshold.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
+"""
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
 
 from __future__ import division
 from hornet.event import GraphsReady

src/hornet/contrib/simplegraphstats.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+"""
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
 from __future__ import division
 from hornet.event import GraphsReady
 from hornet.file import write_csv
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Database API for HORNET.  Allows simplified interaction with `many relational
 database systems <http://www.sqlalchemy.org/docs/05/dbengine.html#supported-dbapis>`_.
 
 >>> conn.close()
 
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 
 from sqlalchemy import create_engine

src/hornet/event.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
 """HORNET uses a event-driven plugin framework.  This module provides various
 types of events and methods for validating those events.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 
 class Event(object):

src/hornet/file.py

 writing) Comma Separated Value files, pickled files, etc.  The interactions
 are designed so that a filename is passed in and all resource handling is 
 handled within this module.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 
 from __future__ import with_statement

src/hornet/loading.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """
 The :mod:`hornet.loading` module provides utilities for the loading of classes
 and objects dynamically.  Most of these tools are used to assist in the loading
 plugins.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 
 import os.path

src/hornet/network/__init__.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Network API provides primitives for interacting a network.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 
 from __future__ import division

src/hornet/network/corenetwork.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Important core classes for the network. Due to high usage, this module
 can be compiled into machine code with Cython for improved performance.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 
 class EdgeDetail(object):

src/hornet/plot.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Simplified library for plotting information.  Reduces interactions to
 as single call.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 import matplotlib.pyplot as plt
 

src/hornet/plugin.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+"""
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
 from decorator import decorator
 from hornet.event import is_accepted_event, EventNotAccepted
 from hornet.file import join

src/hornet/release.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
-"""Release information about HORNET."""
+"""Release information about HORNET.
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
+"""
 
 major_version = '0.4'
 revision = '2a1'
 Platform for analyzing relationships inside a healthcare organization.
 '''
 author = 'John Paulett'
-author_email = 'john.paulett@vanderbilt.edu'
-copyright = '2008-2009 John Paulett'
+author_email = 'john.paulett -at- vanderbilt.edu'
+copyright = '2009 Vanderbilt University'
 url = 'http://hiplab.mc.vanderbilt.edu/projects/hornet/'
 download_url = 'http://hiplab.mc.vanderbilt.edu/projects/hornet/download'
-license = 'Proprietary' 
+license = 'Apache License, Version 2.0' 

src/hornet/task.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Module for the parallel processing of tasks. Avoids the global interpreter 
 lock, thus allowing a single Python process to take advantage of 
 >>> p.map(f, [1, 4, 10])    #doctest: +SKIP
 [1, 16, 100]
 
-
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 try:
     ## for python 2.6+

src/hornet/util.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 """Utility methods for HORNET.  Includes functions to deal with time 
 (:func:`hornet.util.make_periods`) and decorators 
 (:func:`hornet.util.memoize`)
+
+.. moduleauthor:: John Paulett <john.paulett -at- vanderbilt.edu>
 """
 from collections import defaultdict
 from decorator import decorator
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from hornet.event import Event
 from hornet.plugin import Plugin

tests/run_tests.py

 #!/usr/bin/env python
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from os import path
 import logging

tests/test_application.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from datetime import date, timedelta
 from helpers import FakePlugin

tests/test_contrib/test_edgeage.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
 from __future__ import division
 from helpers import FakeApplication, FakeConfig, FakeEvent
 from hornet.contrib.edgeage import *

tests/test_contrib/test_graphpersistence.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from helpers import FakeEvent, FakePlugin
 from hornet.contrib.graphpersistence import *

tests/test_contrib/test_networkabstractor.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
 from __future__ import division
 from helpers import add_biedge, get_edge, FakeEvent
 from hornet.contrib.networkabstractor import *

tests/test_contrib/test_networkbuilder.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from helpers import FakeEvent
 from hornet.contrib.networkbuilder import *

tests/test_contrib/test_nodedistribution.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from hornet.contrib.nodedistribution import *
 from hornet.event import GraphsReady

tests/test_contrib/test_ruleminer.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
 from __future__ import division
 from collections import defaultdict
 from helpers import FakeApplication, FakeConfig, FakeEvent

tests/test_contrib/test_simplegraphstats.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
 from __future__ import division
 from helpers import FakeApplication, FakeConfig, FakeEvent
 from hornet.contrib.simplegraphstats import GraphStats, stats_table
 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from hornet.db import create_engine
 from mock import Mock

tests/test_event.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 import hornet.event
 from hornet.event import *

tests/test_file.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from __future__ import with_statement
 from hornet.file import *

tests/test_loading.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from hornet.loading import *
 from nose import with_setup

tests/test_network.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
 from __future__ import division
 from hornet.network import *
 from mock import Mock

tests/test_plot.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from hornet.file import tmp_file, remove
 from hornet.plot import *

tests/test_plugin.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from helpers import FakeEvent, FakePlugin, cause_error
 from hornet.application import Config

tests/test_release.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 import hornet.release as release
 

tests/test_task.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
+
 from hornet.task import Pool
 from nose import with_setup
 from unittest import TestCase

tests/test_util.py

 # -*- coding: utf-8 -*-
 #
-# Copyright (C) 2008 John Paulett (john -at- vanderbilt.edu)
-# All rights reserved.
-#
-# This software is licensed as described in the file COPYING, which
-# you should have received as part of this distribution.
+# Copyright 2009 Vanderbilt University
+# 
+# Licensed under the Apache License, Version 2.0 (the "License"); 
+# you may not use this file except in compliance with the License. 
+# You may obtain a copy of the License at 
+# 
+#     http://www.apache.org/licenses/LICENSE-2.0 
+# 
+# Unless required by applicable law or agreed to in writing, software 
+# distributed under the License is distributed on an "AS IS" BASIS, 
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
+# See the License for the specific language governing permissions and 
+# limitations under the License. 
 
 from datetime import date, timedelta
 from hornet.util import *