bug with installing mixOmics

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Issue #107 resolved
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I have this R error when I try to load mixOmics:

library(mixOmics) Error: package or namespace load failed for ‘mixOmics’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vIi): object 'vI' not found

I use R 3.4.1, R studio and I manage to install mixOmics 6.2.0 but I can't load it in my R.

Thank you for your help,

Comments (3)

  1. Florian Rohart

    Hi there,

    Which operating system are you using? If it's linux or Mac, could you try to open R in a terminal, and only loading mixOmics.

    Could you do a sessionInfo() please (even if you're using Rstudio in Windows)?

    We've never had this bug reported before, so it's probably something very specific, as something went wrong during the installation of mixOmics 6.2.0. Have you tried to reinstall mixOmics?

  2. CarolineBirer


    Yes thank you for your help, it's now working well. I decided to remove all of my R things from my computer, and re-install everything = it's working. Here is my sessionInfo(), but it does not serve any purpose now. R version 3.4.1 (2017-06-30) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200)

    Matrix products: default

    locale: [1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252 LC_MONETARY=French_France.1252 [4] LC_NUMERIC=C LC_TIME=French_France.1252

    attached base packages: [1] parallel stats graphics grDevices utils datasets methods base

    other attached packages: [1] dplyr_0.7.2 gridExtra_2.2.1 multcomp_1.4-7 TH.data_1.0-8 survival_2.41-3
    [6] mvtnorm_1.0-6 lsmeans_2.27-2 estimability_1.2 metagenomeSeq_1.18.0 glmnet_2.0-10
    [11] foreach_1.4.3 Matrix_1.2-11 limma_3.32.5 Biobase_2.36.2 BiocGenerics_0.22.0 [16] BiocInstaller_1.26.1 ade4_1.7-8 pls_2.6-0 car_2.1-5 RVAideMemoire_0.9-68 [21] reshape2_1.4.2 igraph_1.1.2 RColorBrewer_1.1-2 vegan_2.4-4 permute_0.9-4
    [26] mixOmics_6.2.0 ggplot2_2.2.1 lattice_0.20-35 MASS_7.3-47

    loaded via a namespace (and not attached): [1] tidyr_0.7.1 jsonlite_1.5 splines_3.4.1 ellipse_0.3-8 gtools_3.5.0 shiny_1.0.5
    [7] assertthat_0.2.0 quantreg_5.33 glue_1.1.1 digest_0.6.12 minqa_1.2.4 sandwich_2.4-0
    [13] colorspace_1.3-2 htmltools_0.3.6 httpuv_1.3.5 plyr_1.8.4 pkgconfig_2.0.1 SparseM_1.77
    [19] purrr_0.2.3 xtable_1.8-2 corpcor_1.6.9 scales_0.5.0 gdata_2.18.0 lme4_1.1-13
    [25] MatrixModels_0.4-1 tibble_1.3.4 mgcv_1.8-19 nnet_7.3-12 lazyeval_0.2.0 pbkrtest_0.4-7
    [31] magrittr_1.5 mime_0.5 nlme_3.1-131 gplots_3.0.1 tools_3.4.1 matrixStats_0.52.2 [37] stringr_1.2.0 munsell_0.4.3 cluster_2.0.6 bindrcpp_0.2 compiler_3.4.1 caTools_1.17.1
    [43] rlang_0.1.2 grid_3.4.1 nloptr_1.0.4 iterators_1.0.8 htmlwidgets_0.9 labeling_0.3
    [49] bitops_1.0-6 gtable_0.2.0 codetools_0.2-15 R6_2.2.2 zoo_1.8-0 knitr_1.17
    [55] bindr_0.1 KernSmooth_2.23-15 stringi_1.1.5 Rcpp_0.12.12 rgl_0.98.1 coda_0.19-1

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