plotVar : non orthogonal components for a block

[Former user]

Hello,

When I use the function the function block.splsda for integration, it seems that the components are not orthogonal for a block when this block contains NA.

I would like to know how can I interpret the correlation circle in this case.

Best regards Maxime

[Al J Abadi]

Hi , sorry we’re getting back to you now as we had not realised we have not updated our issues page on Bioconductor (we’re now on GitHub and discussions are on Discourse). As this is not a software issue and more of a theoretical question may I ask you to submit this on Discourse please so our team can help you out? This way other users with similar questions can also benefit.

[Al J Abadi]

to be submitted to discourse

[Al J Abadi]

refer to https://mixomics-users.discourse.group/t/plotvar-components-are-not-orthogonal-with-na-values/64