- plotVar: add plot= TRUE argument ok
FB: could you check that by default comp.select = comp and that by default comp = c(1,2).
Update .Rd file too
- if(object == sgccda) then do not plot the Y block
need to link with Devel sgccda function from Florian.
by default, seems that plotIndiv.pls only show the X rep space, while the sgccda shows all res.space. I think by default pls and gcca should show all spaces (i.e. amend spls / spls so that it shows X-rep and Y-rep, 2 plots, by default). same for RCC. OK
- the plotIndiv by default shows as title: Block:X in PCA. Could we remove that title in all single omics methods? (PCA, IPCA, SPCA, sIPCA, PLSDA, sPLSDA)
Explained variance for PCA (only): 'PC1: 11.36 %', SPACE ISSUE left
- added 3D, 3D ellipses and alpha (btw 0 and 1) OK
cim: send example where similarity > 1? OK .Rd file to notify users that we are defining a similarity (KA) users bugs to fix, 2 issues reported
network: added argument save. OK
plotPerf: remove playwith for this patch OK
barplots of eigenvalues for PCA OK
plotArrow: put x and y axes as a normal plot.