immediate methods improvements

[Kim-Anh Le Cao]

• selectVar with multiblock method: variables are not sorted. OK in devel

• cndition on ncomp in multiblock methods should be mode = 'numeric', not 'double' OK in devel

• selectVar: need to put A block per default, otherwise gives an error. ok should now work to be tested?

• KA to fix selectVar.Rd (problem with outcome name name is name.X etc.)

[Florian Rohart]

see #103

The variables were not sorted in selectVar.sgcca because the scripts was very buggy. Especially because the output of a sgcca object is 'blocks' and not 'data'. Scripts now tested on the example from the selectVar.Rd and gives good results as expected

• selectVar: need to put A block per default, otherwise gives an error.
• KA to fix selectVar.Rd (problem with outcome name name is name.X etc.)

I don't understand these issues. Please clarify

[Kim-Anh Le Cao]

• selectVar: need to put A block per default, otherwise gives an error.
  • If you run selectVar(object, comp = 1) without specifying block then throws error. Could we put a block per default maybe? Or throw a warning? Or outputting all blobkcs when not specified? selectVar(object, comp = 1, block = 1)
• KA to fix selectVar.Rd (problem with outcome name name is name.X etc.)
  • Inconsistency with regards to Values in .Rd

Regards,

Kim-Anh

Too brief? Apologies, I need to restrain my typing due to a computer elbow injury.

--

Dr. Kim-Anh Lê Cao

NHMRC Career Development Fellow

ResTeach Affiliate (School of Chemistry and Molecular Biosciences)

The University of Queensland Diamantina Institute

Translational Research Institute

Level 5, 37 Kent Street | Woolloongabba QLD 4102

T: [phone]| F: [phone]

http://www.tri.edu.au/staff/kim-anh-le-cao

mixOmics: http://mixomics.org/

[Florian Rohart]

selectVar(object,comp=1) now shows outputs for all blocks, as of mixOmics 6.0.0