immediate methods improvements

Create issue
Issue #42 resolved
Kim-Anh Le Cao repo owner created an issue
  • selectVar with multiblock method: variables are not sorted. OK in devel

  • cndition on ncomp in multiblock methods should be mode = 'numeric', not 'double' OK in devel

  • selectVar: need to put A block per default, otherwise gives an error. ok should now work to be tested?

  • KA to fix selectVar.Rd (problem with outcome name name is name.X etc.)

Comments (4)

  1. Florian Rohart

    see #103

    The variables were not sorted in selectVar.sgcca because the scripts was very buggy. Especially because the output of a sgcca object is 'blocks' and not 'data'. Scripts now tested on the example from the selectVar.Rd and gives good results as expected

    • selectVar: need to put A block per default, otherwise gives an error.
    • KA to fix selectVar.Rd (problem with outcome name name is name.X etc.)

    I don't understand these issues. Please clarify

  2. Kim-Anh Le Cao reporter
    • selectVar: need to put A block per default, otherwise gives an error.
      • If you run selectVar(object, comp = 1) without specifying block then throws error. Could we put a block per default maybe? Or throw a warning? Or outputting all blobkcs when not specified? selectVar(object, comp = 1, block = 1)
    • KA to fix selectVar.Rd (problem with outcome name name is name.X etc.)
      • Inconsistency with regards to Values in .Rd

    Regards,

    Kim-Anh

    Too brief? Apologies, I need to restrain my typing due to a computer elbow injury.

    --

    Dr. Kim-Anh Lê Cao

    NHMRC Career Development Fellow

    ResTeach Affiliate (School of Chemistry and Molecular Biosciences)

    The University of Queensland Diamantina Institute

    Translational Research Institute

    Level 5, 37 Kent Street | Woolloongabba QLD 4102

    T: +61 (0)7 3443 7069| F: +61 (0)7 3443 6966

    http://www.tri.edu.au/staff/kim-anh-le-cao

    mixOmics: http://mixomics.org/

  3. Log in to comment