General improvements FB

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Issue #43 resolved
Kim-Anh Le Cao repo owner created an issue

Plots

  • Could you double check the plotContrib function please? I dont think the color represents the group that has the maximal median expression/count value. See email attached (read from bottom to top + figures).

  • plotArrow as a proper function (similar to plotIndiv, with pch) and for GCCA

  • plotIndiv with plot.star, centroid = TRUE (if group is provided)

  • test Michael's circos network - I will send you that.

  • ROC / AUC curves. See Benoit's code in Shiny

Methods

  • tune.splsda (see tune.multilevel)

Computational improvements

  • have a look at dplyr to deal with data frames. Also the new package purr

  • paral option?

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