update estimateAbundance, plotAbundanceCurve to work with mixed data

Issue #102 new
ssnn created an issue

estimateAbundance, plotAbundanceCurve to allow for mixed bulk and sc, H and L data. Counting will be done:

  • For the sc part (cell_id exists), count unique cell ids within a clone_id.
  • For the bulk part (no cell_id), count the number of sequences in the locus of interest (usually IGH). Keep the option to use dupcount.

Comments (0)

  1. Log in to comment