Trim not working for amino acid sequences

[Timothy Sundell]

Hi,

When using the aminoAcidProperties() function, I noticed that the trim option is not used when setting nt = FALSE, only if nt = TRUE will it be considered. I don’t know if this is by design, but from reading the documentation of the trim option, it sounds like this is by mistake:

trim

if TRUE remove the first and last codon/amino acids from each sequence before calculating properties. If FALSE do not modify input sequences.

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See line 545 and line 546 in the AminoAcids.R file on Github for reference.

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Thank you.

[ssnn]

Thanks for reporting. Fixed in 6bfb6d9.