Incorporate prototype-topology package

Issue #19 resolved
Jason Vander Heiden created an issue

It's probably about time to move the tree topology analysis code into alakazam, either in v0.2.1 or v0.2.2.

Comments (5)

  1. Jason Vander Heiden reporter

    Started on this. Major things that need doing:

    1. Update to igraph >= 1.0 function names and arguments.
    2. Swap all plyr and reshape2 code for dplyr and tidyr code.
    3. Remove all non-standard evaluation.
    4. Flesh out docs and examples.
    5. Write a vignette.
    6. Tests and testing.
  2. Jason Vander Heiden reporter

    1-4 are done. We could probably replace the ExampleTree data with a more interesting set, but it's not critical.

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