Gravy error from R CMD Check

Issue #22 resolved
Namita Gupta created an issue
* checking examples ... ERROR
Running examples in ‘alakazam-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: gravy
> ### Title: Calculate GRAVY score
> ### Aliases: gravy
> 
> ### ** Examples
> 
> aa_seq <- "CARDRSTPWRRGIASTTVRTSW"
> gravy(aa_seq)
Warning in data(H, envir = environment()) : data set ‘H’ not found
Error in Peptides::hydrophobicity(aa_seq, scale) : object 'H' not found
Calls: gravy -> <Anonymous>

Comments (7)

  1. Susanna Marquez

    I will work on this today. I think the code is not yet stable, because I stopped abruptly to work on it and switched to fix shm issues. Sorry.

    I think we should have a stable branch and a development branch.

  2. Jason Vander Heiden

    Usually for a major feature addition - something that'll take more than a couple days - I would make a feature branch, and then merge the branch when the new features work. But... We didn't do that this time, and it's a bit late. Next time for sure. :)

  3. Jason Vander Heiden

    I think I know what is going on here now... "H" is the data object (a list) from the Peptides packages and it couldn't find it. Namespace issue of some kind. Probably fixable with proper import directives.

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