I don't have write access to the normal /tmp directory on this system, so I changed TMPDIR in the environment before running R.
I then walk through the example in the docs for lineage reconstruction, but I get this error. I can see that it does create a temporary directory
Rtmp5ZXe31 in the current directory, but not sure what file it is complaining about.
> graph <- buildPhylipLineage(clone, dnapars_exec, rm_temp=TRUE) Error in runPhylip(temp_path, dnapars_exec, verbose = verbose) : (list) object cannot be coerced to type 'double' In addition: Warning message: In file(con, "w") : cannot open file './Rtmp5ZXe31/fileb6e1c2d7061': No such file or directory
Or maybe actually the error is with the example data...