Lower case in readIgphyml and combineIgphyml

Issue #81 resolved
ssnn created an issue

@Kenneth Hoehn I have changed to lower case the outputs of exported functions. I have not changed readIgphyml and combineIgphyml because I have never used those functions and I am not sure what I am going to break if I change them, and I don’t have any IgPhyml .tab file. Can you please take care of these two, and make sure they work with igPhyml?

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