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Issues (26–50 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#81: Lower case in readIgphyml and combineIgphyml
task major resolved
#78: collapseDuplicates edge case (every sequence in a clone_id is ambiguous except for one sequence)
bug minor resolved
#80: alakazam::getnproc can sometimes return NA because of parallel::detectCores() which can be problematic for functions that use this command e.g. groupBaseline
bug minor resolved
#79: Issue is plotting output from estimateAbundance function using ExampleDb dataset
bug minor resolved
#74: Remove NSE from gather call in combineIgphyml
bug minor resolved
#68: Added newick import/export
enhancement trivial resolved
#73: Old tidyverse SE functions are deprecated
enhancement major resolved
#75: New diversity functions
enhancement major resolved
#71: Count genes once per clone, or count one gene per clone?
enhancement major resolved
#76: Document use of collapseDuplicates outside of makeChangeClone
enhancement major new
#72: Replace gridPlot with cowplot:plot_grid
enhancement minor new
#70: error and warning messages from plotDiversityCurve()
bug minor resolved
#69: Allow ungrouped data in rarefyDiversity and estimateAbundance
enhancement minor resolved
#64: Make length mismatch warning more meaningful in makeChangeoClone
enhancement minor resolved
#65: countGenes in Gene.R
enhancement minor resolved
#67: changing tmp directory buildPhylipLineage
bug minor resolved
#66: Used variable in Rcpp distance functions
bug trivial resolved
#63: Clarification to using indirect=TRUE in testEdges
bug minor resolved
#62: collapseDuplicates
bug major resolved
#53: Add clone count test to countGenes unit tests
enhancement minor resolved
#33: getGene returns first not Not Localized results
proposal minor resolved
#59: Add an option to aminoAcidProperties to use region definitions
proposal minor wontfix
#28: Add CDR3 and FRW4 to extractVRegion
enhancement minor wontfix
#34: More diversity plots
enhancement minor resolved
#61: See if there is way to add dispatching to plotAbundance
enhancement minor resolved
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