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Issues (51–75 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#44: countGenes. Error when using the clone argument with data from the older ExampleDb.gz
bug major resolved
#42: getSeqMatrix vs getDistanceMatrix
enhancement minor invalid
#30: For aminoAcidProperties and related fx: test NAs
enhancement major resolved
#17: Move amino acid analysis from repertoire into main alakazam package
enhancement minor resolved
#22: Gravy error from R CMD Check
bug major resolved
#26: translateDNA should take a vector
enhancement major resolved
#27: countPattern should take a vector
enhancement major resolved
#24: R CMD Check gravy warning
enhancement minor resolved
#78: collapseDuplicates edge case (every sequence in a clone_id is ambiguous except for one sequence)
bug minor resolved
#80: alakazam::getnproc can sometimes return NA because of parallel::detectCores() which can be problematic for functions that use this command e.g. groupBaseline
bug minor resolved
#75: New diversity functions
enhancement major resolved
#65: countGenes in Gene.R
enhancement minor resolved
#50: getSegment automatically strips D from names
proposal minor invalid
#7: Add cross-sample distToNearest mode
enhancement minor invalid
#1: distToNearest return object might be better as a vector
enhancement trivial resolved
#94: buildPhylipLineage fails on Windows
bug major resolved 1
#85: IgPhyML lineage tree analysis does not work with test data
bug major resolved
#82: Review NEWS and vignettes
task major resolved
#81: Lower case in readIgphyml and combineIgphyml
task major resolved
#74: Remove NSE from gather call in combineIgphyml
bug minor resolved
#68: Added newick import/export
enhancement trivial resolved
#91: basic, acidic and aromatic output fields from aminoAcidProperties() are always zero
bug minor resolved
#92: Add readAIRR() and update readChangeoDb(). They should accept a vector of files and check uniqueness
proposal minor new 1
#93: Have countClones handle NAs in clone_id
enhancement trivial resolved
#86: Execution halted for geneCounts() on c_call
enhancement minor resolved
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