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Issues (1–25 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#107: Missing gene usage values for genes with "D" in the name
proposal major closed
#77: (Commit hash 948e415) CLONE fields in Diversity.R need to be hard-coded and simplified
enhancement minor closed
#59: Add an option to aminoAcidProperties to use region definitions
proposal minor wontfix
#28: Add CDR3 and FRW4 to extractVRegion
enhancement minor wontfix
#37: Conversion to stringi
enhancement minor wontfix
#46: Reduce example run times
bug major wontfix
#87: writeChangeoDb() puts NA for null/blank values
bug minor invalid
#57: readChangeoDb reads a list of files in parallel
proposal minor invalid
#58: add `fields` to writeChangeoDb to split a db file into multiple files
proposal minor invalid
#47: Write test for distToNearest when seq has stop codon
task minor invalid
#50: getSegment automatically strips D from names
proposal minor invalid
#42: getSeqMatrix vs getDistanceMatrix
enhancement minor invalid
#7: Add cross-sample distToNearest mode
enhancement minor invalid
#103: groupGenes needs updated naming and to figure out the locus list.
bug minor resolved
#105: ylim argument in plotAbundanceCurve has no effect
bug minor resolved
#104: readChangeoDb convert the sequence_id column into double, probably when ID start by a digit
bug major resolved
#101: Error running estimateAbundance
bug major resolved
#100: Clonal diversity
bug major resolved
#99: Calculate clonal frequencies
enhancement major resolved 1
#96: Use AIRR-ish names for output fields of calcJunctionAlignment
enhancement trivial resolved
#94: buildPhylipLineage fails on Windows
bug major resolved 1
#95: calcJunctionAlignment needs an example
task minor resolved
#91: basic, acidic and aromatic output fields from aminoAcidProperties() are always zero
bug minor resolved
#93: Have countClones handle NAs in clone_id
enhancement trivial resolved
#86: Execution halted for geneCounts() on c_call
enhancement minor resolved
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