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Issues (51–75 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#51: readChangeoDb failed in sbatch mode on Farnam
bug minor resolved
#52: seqDist crashes on Mac
bug major resolved
#53: Add clone count test to countGenes unit tests
enhancement minor resolved
#54: Adding indel support to buildPhylipLineage
proposal major resolved
#55: Add publication reference to Description field for v0.2.9
enhancement trivial resolved
#56: `readChangeoDb` fails when input file contains non-standard column names
bug minor resolved
#57: readChangeoDb reads a list of files in parallel
proposal minor invalid
#58: add `fields` to writeChangeoDb to split a db file into multiple files
proposal minor invalid
#59: Add an option to aminoAcidProperties to use region definitions
proposal minor wontfix
#60: Allow non-uniform sampling in rarefyDiversity
enhancement minor resolved
#61: See if there is way to add dispatching to plotAbundance
enhancement minor resolved
#62: collapseDuplicates
bug major resolved
#63: Clarification to using indirect=TRUE in testEdges
bug minor resolved
#64: Make length mismatch warning more meaningful in makeChangeoClone
enhancement minor resolved
#65: countGenes in Gene.R
enhancement minor resolved
#66: Used variable in Rcpp distance functions
bug trivial resolved
#67: changing tmp directory buildPhylipLineage
bug minor resolved
#68: Added newick import/export
enhancement trivial resolved
#69: Allow ungrouped data in rarefyDiversity and estimateAbundance
enhancement minor resolved
#70: error and warning messages from plotDiversityCurve()
bug minor resolved
#71: Count genes once per clone, or count one gene per clone?
enhancement major resolved
#72: Replace gridPlot with cowplot:plot_grid
enhancement minor new
#73: Old tidyverse SE functions are deprecated
enhancement major resolved
#74: Remove NSE from gather call in combineIgphyml
bug minor resolved
#75: New diversity functions
enhancement major resolved
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