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  3. alakazam

Issues

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Issues (51–75 of 108)

Title T P Status Votes Assignee Milestone Created Updated Actions
#58: add `fields` to writeChangeoDb to split a db file into multiple files
proposal minor invalid
#57: readChangeoDb reads a list of files in parallel
proposal minor invalid
#56: `readChangeoDb` fails when input file contains non-standard column names
bug minor resolved
#55: Add publication reference to Description field for v0.2.9
enhancement trivial resolved
#54: Adding indel support to buildPhylipLineage
proposal major resolved
#53: Add clone count test to countGenes unit tests
enhancement minor resolved
#52: seqDist crashes on Mac
bug major resolved
#51: readChangeoDb failed in sbatch mode on Farnam
bug minor resolved
#50: getSegment automatically strips D from names
proposal minor invalid
#49: calcBaseline and calcBaselineHelper : testStatistic arg for imbalanced wrong
bug minor resolved
#48: Add saturation curves
enhancement major new
#47: Write test for distToNearest when seq has stop codon
task minor invalid
#46: Reduce example run times
bug major wontfix
#45: Gene usage and RDI vignette
enhancement minor resolved
#44: countGenes. Error when using the clone argument with data from the older ExampleDb.gz
bug major resolved
#43: Add clone subsetting to countGenes
enhancement minor resolved
#42: getSeqMatrix vs getDistanceMatrix
enhancement minor invalid
#41: Alakazam with older R version
proposal major resolved
#40: Example column names
bug major resolved
#39: Consider having readChangeoDb wrap fread() instead of read.table()
enhancement minor resolved
#38: Add tigger gene ordering function
enhancement minor resolved
#37: Conversion to stringi
enhancement minor wontfix
#36: Won't build on R < 3.2.0
bug major resolved
#35: Changes required for CRAN resubmission
bug major resolved
#34: More diversity plots
enhancement minor resolved
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