kleinstein / alakazam / issues

Title	T	P	Status	Assignee	Created	Updated
#80: alakazam::getnproc can sometimes return NA because of parallel::detectCores() which can be problematic for functions that use this command e.g. groupBaseline	bug	minor	resolved	Roy Jiang	2019-09-15	2020-03-06
#79: Issue is plotting output from estimateAbundance function using ExampleDb dataset	bug	minor	resolved		2019-08-27	2019-08-27
#76: Document use of collapseDuplicates outside of makeChangeClone	enhancement	major	new		2019-06-03	2019-06-03
#72: Replace gridPlot with cowplot:plot_grid	enhancement	minor	new		2019-04-20	2019-04-20
#70: error and warning messages from plotDiversityCurve()	bug	minor	resolved	Jason Vander Heiden	2018-09-14	2018-09-14
#69: Allow ungrouped data in rarefyDiversity and estimateAbundance	enhancement	minor	resolved	Jason Vander Heiden	2018-09-03	2018-09-06
#64: Make length mismatch warning more meaningful in makeChangeoClone	enhancement	minor	resolved	Jason Vander Heiden	2018-07-26	2018-08-27
#65: countGenes in Gene.R	enhancement	minor	resolved	Roy Jiang	2018-07-26	2018-08-27
#67: changing tmp directory buildPhylipLineage	bug	minor	resolved		2018-08-20	2018-08-22
#66: Used variable in Rcpp distance functions	bug	trivial	resolved	nima nouri	2018-08-07	2018-08-07
#63: Clarification to using indirect=TRUE in testEdges	bug	minor	resolved		2018-05-04	2018-05-07
#62: collapseDuplicates	bug	major	resolved	Jason Vander Heiden	2018-03-16	2018-03-16
#53: Add clone count test to countGenes unit tests	enhancement	minor	resolved	Jason Vander Heiden	2017-05-31	2018-03-15
#33: getGene returns first not Not Localized results	proposal	minor	resolved	ssnn	2016-01-25	2018-03-15
#59: Add an option to aminoAcidProperties to use region definitions	proposal	minor	wontfix		2017-12-06	2018-03-14
#28: Add CDR3 and FRW4 to extractVRegion	enhancement	minor	wontfix	Jason Vander Heiden	2015-12-10	2018-03-14
#34: More diversity plots	enhancement	minor	resolved	Jason Vander Heiden	2016-01-26	2018-03-14
#61: See if there is way to add dispatching to plotAbundance	enhancement	minor	resolved	Jason Vander Heiden	2018-02-26	2018-03-14
#57: readChangeoDb reads a list of files in parallel	proposal	minor	invalid		2017-12-06	2018-03-14
#58: add `fields` to writeChangeoDb to split a db file into multiple files	proposal	minor	invalid		2017-12-06	2018-03-14
#60: Allow non-uniform sampling in rarefyDiversity	enhancement	minor	resolved	Hailong Meng	2018-02-02	2018-02-02
#56: `readChangeoDb` fails when input file contains non-standard column names	bug	minor	resolved		2017-11-20	2017-11-20
#55: Add publication reference to Description field for v0.2.9	enhancement	trivial	resolved	Jason Vander Heiden	2017-09-21	2017-11-15
#16: Add annotation collapse without duplicate removal to collapseDuplicates	enhancement	minor	resolved	Jason Vander Heiden	2015-08-21	2017-09-21
#47: Write test for distToNearest when seq has stop codon	task	minor	invalid	ssnn	2016-08-05	2017-09-21